KEGG   Mus caroli (Ryukyu mouse): 110304747
Entry
110304747         CDS       T05910                                 
Symbol
Kdm5b
Name
(RefSeq) lysine-specific demethylase 5B
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
mcal  Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:mcal01009]
    110304747 (Kdm5b)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mcal03036]
    110304747 (Kdm5b)
Enzymes [BR:mcal01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     110304747 (Kdm5b)
Protein phosphatases and associated proteins [BR:mcal01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     110304747 (Kdm5b)
Chromosome and associated proteins [BR:mcal03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    110304747 (Kdm5b)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHD_2 zf-PHD-like
Other DBs
NCBI-GeneID: 110304747
NCBI-ProteinID: XP_021031976
Ensembl: MGP_CAROLIEiJ_G0014626
UniProt: A0A6P5QFN3
LinkDB
Position
1:126156588..126231515
AA seq 1544 aa
MEPATTLPPGPRPALPLGGPGPLGEFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTG
ICKVRPPPDWQPPFACDVDKLHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTLKI
PHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN
PYNLFLSGDSLRCLQKPNLTSDTKDKEYKPHDIPQRQSVQPAETCPPARRAKRMRAEAMN
IKIEPEEATEARTHNLRRRMGCTTPKWENEKEMKSTIKQEPTEKKDCELESEKEKPKSRA
KKTATAVDLYVCLLCGSGNDEDRLLLCDGCDDSYHTFCLVPPLHDVPKGDWRCPKCLAQE
CNKPQEAFGFEQAARDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEED
VTVEYGADIASKEFGSGFPVRDGKIKISPEEEEYLDSGWNLNNMPVMEQSVLAHITADIC
GMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPE
LFVSQPDLLHQLVTIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAV
NFCTVDWLPLGRQCVEHYRLLHRYCVFSHDEMICKMASKADVLDVVVASTVQKDMAIMIE
DEKALRETVRKLGVIDSERMDFELLPDDERQCIKCKTTCFMSAISCSCKPGLLVCLHHVK
ELCSCPPYKYNLRYRYTLDDLYPMMNALKLRAESYNEWALNVNEALEAKINKKKSLVSFK
ALIEESEMKKFPDNDLLRHLRLVTQDAEKCASVAQQLLNGKRQTRYRSGGGKSQNQLTVN
ELRQFVTQLYALPCVLSQTPLLKDLLNRVEDFQQQSQKLLSEEMPSAAELQELLDVSFEF
DVELPQLTEMRIRLEQARWLEEVQQACLDSSSLSLDDMRRLIDLGVGLAPYSAVEKAMAR
LQELLTVSEHWDDKAKSLLRARPRHSLSSLATAVKEMEEIPAYLPNGTVLKDSVQRARDW
VQDVDALQAGGRVPVLETLIELVARGRSIPVHLNSLPRLEMLVAEVHAWKECAAKTFLPE
NSTYSLLEVLCPRCDIGLLGLKRKQRKLKEPLPSGKKRSTKLESLSDLERALMESKETAA
AMATLGEARLREMEALQSLRFANEEKLLSPVQDIEMKVCLCQKTPATPMIQCELCRDAFH
TSCVAAPSISQSSRIWLCPHCRRSEKPPLEKILPLLASLQRIRVRLPEGDALRYMIERTV
NWQHRAQQLLSSGNLKLVQDQVGSGLLSSRWPASAGQASATDKVSQPPGTTSFSLPDDWD
NRSSYLHSPFSTGQSCLPLHGLSPEVNELLMEAQLLQVSLPEIQELYQTLLTKPSSAQQA
DRSSPVRPSSEKNDCLRGKRDAINSPERKLKRRPEREGLPSERWDRVKHMRTPQKKKIKL
SHPKDMNSFKLERERSYDLVRNAETHSLPSDTSYSEQEDSEDEDAICPAVSCLQPEGDEV
DWVQCDGSCNQWFHQVCVGVSPEMAEKEDYICVRCTGKDAPSRK
NT seq 4635 nt   +upstreamnt  +downstreamnt
atggagccggccaccacgctgcccccaggcccgcgcccggcgctgcccctcgggggcccg
ggcccgctgggagagttcctgcctccccccgagtgtccggtcttcgagccgagctgggaa
gagttcgcggaccccttcgctttcatccacaagatccggcccatagccgagcagactggg
atctgtaaggtgcggccgccgccggattggcagccaccattcgcttgtgatgtcgataaa
cttcatttcaccccacgaatccagaggctgaatgaactggaggcccaaacacgtgtaaaa
ttgaatttcctggaccagattgcaaagtattgggagcttcaaggaagtactctgaagatc
ccccacgtggagagaaagatcttagacctgttccagctaaataagttagtcgcagaagaa
ggtgggtttgcagttgtttgcaaggatagaaaatggaccaaaattgccaccaagatgggt
tttgctcctggtaaagctgtgggctcacatatcaggggacattatgagcgaatactcaat
ccatacaatttgttcctgtctggagacagtctgaggtgtcttcagaagcctaacctgacc
tctgacacaaaggacaaggagtacaaaccccatgatattcctcagaggcagtctgtgcag
cctgcagaaacctgtcctccggcccgccgagcaaagcgcatgagagcagaggctatgaat
attaaaattgagccagaagaggcaacagaagccaggactcataatctgagacgccgaatg
ggttgcacaactccaaaatgggaaaatgagaaagaaatgaaaagcaccatcaagcaagag
cccactgagaagaaagactgcgagttagaaagtgagaaggagaagcccaagagccgggcc
aagaaaacggccactgcggtggacctgtatgtgtgcctcttatgtggcagtggcaatgac
gaggaccggctcctactgtgtgacggctgtgatgacagttaccacaccttctgcctggtt
ccccctctccatgacgttcccaagggagactggaggtgtcctaagtgtttggctcaagaa
tgtaataagccacaagaagctttcggctttgaacaagcagcaagggactatacacttcgt
acgtttggagaaatggcagatgcattcaaatctgattacttcaacatgccagtccatatg
gttcccacagagctggtggagaaggaattttggcggctcgtaagcactattgaagaagat
gtcacagtggagtatggagctgatattgcttcaaaagagtttggcagtggctttcctgtt
cgagatgggaaaatcaagatttctcctgaggaagaggaatacctggatagtggctggaat
ttgaacaacatgccagtgatggagcagtctgtccttgctcatattactgctgatatatgt
ggcatgaaactcccctggttgtatgtgggcatgtgcttttcttccttctgttggcatatt
gaagatcactggagctattcaatcaactacttgcactggggtgagccaaaaacctggtat
ggagttccaggctacgctgctgagcagctagagaacgtgatgaagaagctcgctcctgag
ctctttgtgtcccagccggacctgctgcaccagcttgtgaccatcatgaaccccaacacc
ctgatgactcatgaagtgcctgtttatcgaacgaatcagtgtgctggggagtttgtaatt
acatttccaagagcctaccacagtggcttcaaccaaggttttaattttgctgaggccgtt
aacttctgcactgttgattggctgccattgggccgccagtgtgtggagcattatcgcttg
ctgcaccgttattgtgtcttttcccacgatgaaatgatatgcaaaatggcttctaaggct
gatgtattagacgttgtggtagcgtcaactgttcagaaggacatggccatcatgattgag
gatgagaaagctttaagggaaactgttcggaaattgggagtaattgattctgaaagaatg
gattttgagctgttgccagatgatgagcggcagtgtataaaatgcaaaactacatgcttc
atgtctgccatctcctgctcttgtaaacctggcctacttgtttgcctacatcatgtgaaa
gaattgtgttcctgccccccatataagtataacctgcggtatagatacactctggatgat
ctctatccaatgatgaatgcattaaagcttcgagcagagtcttacaatgaatgggcctta
aatgtgaatgaagccttggaagcaaagataaataagaagaaaagtcttgtcagctttaaa
gctttgattgaagaatcagaaatgaagaaattcccagacaatgatcttttgcgtcacctt
cgactagtcacgcaggatgcagaaaagtgtgcctctgttgcccagcagttgcttaatggc
aaaaggcaaacaaggtatcgatctggtggaggaaagtctcagaatcagctgacggtgaat
gaacttagacagtttgtgactcagctgtatgctctgccgtgcgtccttagtcagacaccg
ttgctaaaggatctcttgaatcgtgtggaagatttccaacagcaaagccaaaaactactg
tctgaggaaatgcctagcgctgctgagctacaggagttgctggatgtcagctttgaattt
gatgttgaacttccacagctcactgagatgcgcattcgcttagagcaggcccgctggcta
gaagaggttcagcaggcttgcctggactccagctccctttctttggatgatatgagacga
ctcatagacttaggggtggggctggctccatattctgccgtggagaaagctatggcccgc
ctgcaggagctgctaacagtgtcagaacactgggacgacaaagccaagagtctcctcaga
gcaagaccacggcattctttgagtagccttgctacagcagtcaaagagatggaggagatc
cctgcctacctgcccaatggtacagtcctgaaggattctgtgcaaagagccagagactgg
gttcaggatgtggatgcattgcaggcaggaggacgtgtgccagtgttagagacactcatt
gaacttgttgcaagaggccgatctatcccagtacatctcaattctttaccaagattggaa
atgttagtagctgaagttcatgcttggaaagaatgtgctgctaaaacattcttgcctgag
aattctacatattctctgttagaggttctttgccctcggtgtgacattggccttttgggg
ctgaaaaggaaacagagaaagttgaaggagcccttgccaagtggaaagaagagaagcacc
aagttagagagcctgagcgatctggagagggctctgatggagagcaaagagactgcggca
gctatggcaactcttggggaagctcgcctacgagagatggaagctttgcagtctctcaga
tttgccaatgaagagaaattgctgtcacctgtccaagacatagagatgaaagtctgcttg
tgtcagaagactccagccactcccatgattcagtgtgaactctgcagggatgctttccat
actagttgtgtggcagcacccagtatttcacaaagctcccgaatctggctttgtcctcac
tgtcggaggtcagagaaacctccattagagaaaattctgcctctgctggcctccctacag
cgtataagagttcgtcttcctgaaggagatgcactccgatacatgattgaaagaaccgtg
aactggcaacatagagcccagcagctgctttcttcagggaatctaaaacttgtgcaagac
caagtgggttctggactgttgtctagcagatggccagcctctgcaggacaggcatcagca
acagataaggtgtctcagcctcctggcacaacatccttttcattgcccgatgactgggac
aacagaagctcatatttacactctcccttctctactggacagagttgtctccccctccat
ggtttaagtccagaagtgaatgaattgctgatggaagcccagctgctccaggtatccctt
cctgaaattcaggagctttatcagactctacttacgaagccaagctctgctcagcaagct
gaccgaagttcaccagttagacccagcagtgagaagaacgattgccttcgagggaaacga
gatgcaatcaacagtcctgagaggaaactgaaaaggcgcccagaaagagaaggccttccc
agtgagcggtgggatcgagttaaacacatgcggacgccccaaaagaagaaaatcaaactg
agtcaccccaaggacatgaacagtttcaagttagaaagagagcgtagctatgacttagtg
cgtaatgccgaaactcactccctgccctcagacacatcctactccgaacaggaggactct
gaggatgaagatgccatctgtccagctgtgagctgcctgcagccagaaggagatgaggtg
gactgggtccagtgtgatggcagctgcaatcagtggtttcaccaggtctgtgttggtgtc
tctccagagatggcagagaaggaagactacatctgtgtgcgctgtactgggaaggacgca
ccaagccgaaagtaa

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