Mus caroli (Ryukyu mouse): 110308223
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Entry
110308223 CDS
T05910
Symbol
Msh3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal01524
Platinum drug resistance
mcal03430
Mismatch repair
mcal05200
Pathways in cancer
mcal05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110308223 (Msh3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
110308223 (Msh3)
09162 Cancer: specific types
05210 Colorectal cancer
110308223 (Msh3)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
110308223 (Msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcal03400
]
110308223 (Msh3)
DNA repair and recombination proteins [BR:
mcal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110308223 (Msh3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
110308223
NCBI-ProteinID:
XP_021036292
Ensembl:
MGP_CAROLIEiJ_G0018767
UniProt:
A0A6P5R2X8
LinkDB
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Position
13:complement(85956539..86111470)
Genome browser
AA seq
1095 aa
AA seq
DB search
MPRGKSASGGSTAAGPGPGRQTVLSRFFRSAGSLRSSASSTEPAEKVTEGDGRKRSLGNG
GPTKKKAKKVPEKEEENISVASHNPEAKKCLRPRIVLKSLEKLKEFCCDSALPQNRVQTE
ALRERLEVLPRCTDFEDITLQRAKNAVLSEDSKPQANQKDSQFGPCPEIFQKTSDCKPFN
KRSKSIYTPLELQYIDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMT
ASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGE
DVNPLIRLDDSVNIDEVMTDTSTNYLLCIYEEKENIKDKKKGNISVGIVGVQPATGEVVF
DCFQDSASRLELETRISSLQPVELLLPSDLSAPTEMLIQRATNVSVRDDRIRVERMNNAY
FEYSHAFQTVTEFYARDIVDSQGSQSLSGVINLEKPVICALAAIIRYLKEFNLEKMLSKP
ESFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKNWVTQ
PLLKLREINARLDAVSDVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLIV
KSLCHLKSELQALMPAVNAHIQSDLLRALIVEVPELLSPVEHYLKVLNEPAAKVGDKTEL
FKDLSDFPLIKKRKNEIQEVIHSIQMHLQEFRKILKLPSLQYVTVSGQEFMIEIKNSAVS
CIPADWVKVGSTKAVSRFHPPFIVESYRRLNQLREQLVLDCSAEWLGFLENFGEHYHTLC
KAVDHLATVDCIFSLAKVAKQGNYCRPTLQEEKKIIIKNGRHPMIDVLLGEQDQFVPNST
SLSQDSERVMIITGPNMGGKSSYIKQVALVTIMAQIGSYVPAEEATIGIVDGIFTRMGAA
DNIYKGRSTFMEELTDTAEIIRRASPQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK
SLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDESKQDSGDMEQMPDSVTFLYQITRG
IAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSLRRKRLECFTDLWTTHSVKDLHTW
ADKLEMVEIQTSLPH
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgggaaatccgcgtcgggaggctctactgccgccggcccaggcccggggagg
caaacggttctgagccggttcttcagatctgcgggaagcctaagatccagcgcgtcctcc
acggagccagcagagaaggtgacagaaggtgacggcaggaagaggtcactgggaaatggt
gggcccactaagaaaaaagcaaagaaagttccagagaaggaggaagaaaacatctcagta
gcatctcacaaccctgaggcaaagaaatgtctgaggcccaggattgttttaaagtccctg
gaaaagttgaaagaattctgctgtgattctgccctccctcaaaacagagtccagacagaa
gctcttcgggagagacttgaagttctgccaaggtgtactgattttgaagatatcactctg
caacgtgcaaagaatgcggttttgtccgaagattccaaacctcaggctaatcagaaagac
agtcaatttggaccctgccctgaaattttccagaagacttccgattgtaaaccttttaac
aagcgatccaagagcatctatacaccgttagaactgcagtacatagatatgaagcagcag
cataaagacgcagttttgtgcgtggagtgtggttacaagtacagattctttggggaagat
gcagaaattgctgcccgggaactcaatatttattgccacttagaccacaactttatgact
gcaagcatacctacccacagactgttcgtgcatgtccgccgacttgtggccaaaggatac
aaggtgggagttgtgaagcaaactgaaactgccgcattaaaggccatcggagacaataaa
agttctgtcttctcccggaaattgaccgctctttatacgaaatccacacttattggagaa
gatgtgaatcctctcatcaggctggatgattctgtaaatattgatgaggtaatgacagat
acctctaccaactatcttctgtgtatctacgaagaaaaggagaacattaaagacaaaaag
aaggggaacatttccgttggtatcgtgggagtgcagcctgcaaccggcgaagttgtgttt
gactgcttccaggactctgcttccagactggagctggagactcgcatatcaagcctgcag
cctgtggaattactgcttccctccgacctgtctgcgccaacagagatgctcatccaaaga
gccaccaatgtcagtgtgcgggatgacagaattcgagtagaaaggatgaataatgcttac
tttgaatacagccatgctttccagacagttacggagttttatgctagagacatagttgac
agccagggctctcagagtctctctggtgtcattaacttggagaagcctgtgatctgcgcc
ttggctgccataataaggtacctcaaggaatttaacctggaaaagatgctgtccaaaccc
gagagttttaaacagctgtcaagtggaatggaattcatgagaattaatgggacaacgcta
agaaatctggagatcctacagaatcagactgatatgaagaccaaaggaagtttgctttgg
gttttagaccacactaaaacttcatttgggagaaggaagttaaagaattgggttacccag
ccactgcttaaattaagggaaataaatgcccgacttgatgcagtatctgatgttctccac
tcagaatccagtgtgtttgagcagatagaaaaccttcttcgtaagttaccggatgtcgag
agaggactatgtagcatttatcacaagaagtgctctacccaagagttcttcttgatcgtc
aaaagcctgtgtcacctgaagtcagaacttcaagcattaatgcctgctgttaatgcccac
attcagtccgacttactccgagcactcatcgtggaggttcctgagctcctcagcccagtg
gagcattacttaaaggttctgaatgagccagctgccaaagttggcgataaaactgaatta
ttcaaagacctctctgacttccctttaataaaaaagaggaaaaatgaaattcaagaagtc
attcacagcatccaaatgcatttacaggaatttcggaaaatattaaaacttccttcttta
caatatgtgactgtatcaggacaagagtttatgattgaaataaagaactcagctgtatct
tgcatcccagctgattgggtgaaggttggaagcacaaaagctgtgagccgctttcaccct
cccttcattgtggaaagctacagacgtctgaatcagctccgggagcagctagtccttgac
tgcagtgctgaatggcttggcttcctagagaattttggtgaacattatcacactttgtgt
aaggctgtggatcacctagcaactgttgactgtattttctccctggccaaggtcgctaaa
caaggaaattactgcaggccaactctacaagaagaaaagaaaatcatcataaaaaatgga
aggcaccctatgattgatgtgttgctgggtgaacaagatcagtttgtgcccaacagtacg
agtttatcacaggactctgagagagtcatgataatcaccggaccaaacatgggtgggaag
agctcctacataaaacaggttgccctggttaccatcatggctcagattggctcctacgtt
cctgcagaggaagccacaatcgggattgtggatggcattttcacaaggatgggtgctgca
gacaatatctacaaaggccggagtactttcatggaagaactgacggacacagcggaaata
atcaggagagcgtccccacagtccttggttatcctggatgagctggggagagggacaagc
acccatgacggaatcgccatcgcctatgcaactctagagtattttatccgagacgtgaaa
tctttaacactgttcgttacccactatccaccggtctgtgaactagaaaaatgttaccca
gagcaagtggggaattaccacatgggattcttggtcaatgaggatgaaagcaagcaggac
tcgggtgacatggagcagatgccggattctgtcacttttctctatcagataacccgagga
attgcagcgagaagttatggactgaatgtggcgaagctagcagacgtgcctagagaagtc
ttacagaaagctgcgcacaagtctaaggagctggaaggcttagtcagtctgagaaggaaa
aggcttgaatgctttaccgacttatggacgacacacagtgtgaaggacctgcacacatgg
gcagataagctggaaatggtggaaatacagacttctctcccacattag
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