Mus caroli (Ryukyu mouse): 110311564
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Entry
110311564 CDS
T05910
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04612
Antigen processing and presentation
mcal05145
Toxoplasmosis
mcal05152
Tuberculosis
mcal05164
Influenza A
mcal05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
110311564 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
110311564 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
110311564 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
110311564 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
110311564 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
mcal01001
]
110311564 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mcal04054
]
110311564 (Ciita)
Enzymes [BR:
mcal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
110311564 (Ciita)
Protein kinases [BR:
mcal01001
]
Serine/threonine kinases: Other
TAF1 family
110311564 (Ciita)
Pattern recognition receptors [BR:
mcal04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
110311564 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
110311564
NCBI-ProteinID:
XP_021040605
Ensembl:
MGP_CAROLIEiJ_G0020444
UniProt:
A0A6P5R0A1
LinkDB
All DBs
Position
16:7029877..7076640
Genome browser
AA seq
1156 aa
AA seq
DB search
MNHFQAILAQVRTLLSSQKPRQVRALLDGLLEEELLSREYHCALLHEPDGDALARKISLT
LLEKGDLDLTFLSWVCNSLQAPTVERGISYRDHGDHSLCATMELGSPEGSYLELLNSDAD
PLHLYHLYDQMDLAGEEEIELSSEPDTDTINCDQFSKLLQDMEMDEETREAYANIAELDQ
YVFQDTQLEGLSKDLFIEHIGAEEGFGENIEIPVEAGQKPQKRRFPEEHAMDSKHRKLVP
TSRTSLNYLDLPAGHIQIFTTLPQRLWQISGAGTGLSSVLIYHGEMPQVNQVLPSGGLTT
PSLPQSPDRPGSTSPFTPSAADLPSMPEPALTSRVNETEDTTSPSPSQEDPESSIKLPKW
PEAVERFQHSLQDKYKALPQSPRGPLVAVELVRARLERGSNKSQERELATPDWTERQLAH
GGLAEVLQVVSDCRRPGETQVVAVLGKAGQGKSHWARTVSHTWACGQLLQYDFVFYVPCH
CLDRPGDTYHLRDLLCPPSLQPLAMDDEVLDYIMRQPDRVLLILDAFEELEAQDGLLHGP
CGSLSPEPCSLRGLLAGIFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFSTKQA
KIYMRHYFENSGTAGNQDKALGLLEGQPLLRSYSHSPVLCRAVCQLSKALLEQGTEAQLP
CTLTGLYVSLLGPAAQNSPPGALVELAKLAWELGRRHQSTLQESRFSSVEVKTWAVTQGL
MQQTLETTEAQLAFSSFLLQCFLGAVWLAQCNEIKDKELPQYLALTPRKKRPYDNWLEGV
PRFLAGLVFQPRAQCLGALVEPAVAAVADRKQKALTRYLKRLKLGTLRAGRLLELLHCAH
ETQQPGIWEHVAHQLPGHLSFLGTRLTPPDVYVLGRALETASQDFSLDLRQTGVEPSGLG
NLVGLSCVTSFRASLSDTMALWESLQQQGETQLLQAAEEKFTIEPFKAKSPKDVEDLDRL
VQTQRLRNPSEDAAKDLPAIRDLKKLEFALGPVLGPQAFPTLAKILPAFSSLQHLDLDSL
SENKIGDKGVTKLSATFPQLKALETLNLSQNSITDVGACKLAEALPALAKSLLRLSLYNN
CICDKGAKSLAQVLPDMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTIPF
GVQEHLQQLDARISLR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacttccaggccatcctggcccaggtacggacactgctctccagccagaagccc
aggcaggtgcgggccctcctggatggtctgctggaagaagagctgctctcacgggaatac
cactgtgccctgctgcatgagcctgatggtgatgccctggcccggaagatttccctgacc
ctgctggagaaaggggacttagacttgactttcttgagctgggtctgcaacagtctgcag
gctcccacggtagagaggggcatcagttacagggaccatggagaccatagtctgtgtgcc
accatggaactgggctctccagagggcagctacctggagctccttaacagtgatgccgac
cccctacatctctaccacctctatgaccagatggacctggctggagaggaggagattgaa
ctcagctcagagccagacacagacaccatcaactgcgaccagttcagcaagctgttgcag
gacatggaaatggatgaagagacgcgggaggcctatgccaacattgcggaactggatcag
tacgtgttccaggatacccagctagagggcctgagcaaggacctcttcatagagcacatt
ggagcagaggaaggctttggtgagaacatagagatccctgtagaagcaggacagaagcct
cagaagagacgcttcccagaagagcatgctatggactcaaagcacaggaagctagtgccc
acctctaggacctcactgaactatttggatctccccgctgggcacatccagatctttacc
actctgccccagagactctggcaaatctcaggggctggcacaggtctctccagtgtccta
atctaccacggtgagatgccccaggtcaaccaagtactcccttcaggcggcctcactacc
cccagtctcccccagtccccagaccggcctggctccaccagccccttcacaccatctgca
gctgacctgcccagcatgcctgaacctgcgctgacctcccgtgtaaatgagacagaggac
acaacatctccctccccatcccaagaggatcccgagtcttccatcaagcttccaaaatgg
ccagaggctgtggagcgattccagcactccctacaggacaaatacaaggcattgccccag
agcccaaggggtcctctggtggccgtggagctggtacgggccaggctggaaagaggcagc
aacaagagccaggaaagggagctggccactccagactggacagagcgccagctagcccac
ggtggtctggcagaggtacttcaggttgtcagtgactgcaggcgaccaggagagacacag
gtggtcgctgtgctgggcaaggctggccagggcaagagccactgggccaggacagtgagt
cacacctgggcatgtggccagttgctacaatatgactttgtcttctatgtcccctgtcat
tgcttggatcgtcccggggacacctaccacctgcgggatctgctctgtcccccgagcctg
cagccactggccatggatgacgaggtccttgattatatcatgaggcagccggaccgtgtt
ctgctcatcctagatgctttcgaggagctagaggcccaagatggcctccttcatggaccc
tgtggatctctgtccccagagccctgctccctccggggactgctggctgggatcttccag
cggaagctactgagaggctgcacactgctcctcacagcccggccccggggccgcctggct
cagagcctgagcaaggcagatgccatctttgaggtgcccagcttctctaccaagcaggcc
aaaatttacatgaggcactactttgagaactcagggacagcggggaaccaagacaaggcc
ctgggcctcctggaggggcagcctcttctccgcagctatagtcacagccctgttctgtgc
agggctgtgtgccagctctccaaggccctgctagaacagggcacagaggcccagctacct
tgtacacttacaggactctacgtcagcctgctaggccctgcagctcagaacagccctccc
ggagccttagtcgagctggcaaagctggcctgggagctgggacgaagacaccaaagcacc
ttgcaagaaagccggttttcatcagtggaggtgaaaacctgggcagtgacccaaggcttg
atgcagcagaccctggagaccacagaggctcaactggccttctccagttttctgctacag
tgtttcctgggtgctgtgtggctggcacagtgcaatgaaatcaaagacaaggagctgcca
cagtacctggccttgactccgaggaagaagagaccctatgacaactggctggagggtgta
ccacgctttctggctggattagttttccagcctcgagcccagtgcctgggagctctggtg
gagcctgcagtcgctgccgtggcagacaggaagcagaaggctcttaccaggtacctgaag
cgcctgaagctggggacactccgggcagggaggctgctggagctgctccactgtgcccac
gagacacagcaacctgggatatgggagcatgttgcacaccagctccctgggcacctctcc
ttcctgggcacccggctcacacccccagatgtgtatgtgctgggcagggccttggagaca
gccagccaggatttctccttggaccttcgtcagactggcgttgagccttctggactggga
aacctcgtgggactcagctgtgtcaccagtttcagggcctccttgagtgatacaatggca
ttatgggagtcccttcagcagcagggagaaacccagctacttcaggcggcagaggagaag
ttcaccattgagccatttaaagccaaatccccaaaggatgtggaagacctggatcgtctc
gtgcagacccagaggctgagaaacccttcagaagatgcagccaaggatcttcctgccatc
cgggaccttaagaagctagagtttgcgttgggccccgtcttgggcccccaggctttcccc
acactggcaaagatccttccagccttctcttctctgcagcacctggacctggactcactt
agtgagaacaagatcggagacaagggtgtgacgaagctctcagccaccttccctcagctg
aaggccctggagacgctcaacttgtcccaaaacagcatcactgatgtgggtgcctgcaag
cttgcagaagctctgccagccctagccaagtccctcctaaggctgagcttgtacaataac
tgcatctgtgacaaaggagccaagagcctggcacaagtacttccagacatggtgtccctg
cgtgtgatggatgtccagttcaacaagttcacggctgccggtgcccagcagctggcctcc
agccttcagaagtgccctcaggtggaaacactggcaatgtggacacccactatccccttt
ggggttcaggaacacctgcagcagctggatgctaggatcagtctgagatga
DBGET
integrated database retrieval system
