KEGG   Methylobacterium radiodurans: DK427_22905
Entry
DK427_22905       CDS       T05919                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
meti  Methylobacterium radiodurans
Pathway
meti03030  DNA replication
meti03410  Base excision repair
meti03420  Nucleotide excision repair
meti03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:meti00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DK427_22905
   03410 Base excision repair
    DK427_22905
   03420 Nucleotide excision repair
    DK427_22905
   03430 Mismatch repair
    DK427_22905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:meti03032]
    DK427_22905
   03400 DNA repair and recombination proteins [BR:meti03400]
    DK427_22905
Enzymes [BR:meti01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DK427_22905
DNA replication proteins [BR:meti03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DK427_22905
DNA repair and recombination proteins [BR:meti03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DK427_22905
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DK427_22905
   MMR (mismatch excision repair)
    DNA ligase
     DK427_22905
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DK427_22905
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT TatA_B_E
Other DBs
NCBI-ProteinID: AWN39179
UniProt: A0A2U8VZD9
LinkDB
Position
4880764..4883259
AA seq 831 aa
MPNSAANATAKTAEDDLPGTEAAARTEHAGLSERIAEADRLYYQEDAPEITDAEYDRLRR
RLERIEGRFPELAGTGVASASVGAKPSEKFAKVRHAVPMLSLGNAFADTEVEEFVARVRR
FLNWPDSEPLAFTAEPKIDGLSLSLRYEDGVLVTAATRGDGEVGENVTANARTVRDIPER
LTGAGVPAVCEVRGEVYLSHADFAGINARQEAQGKPLFANPRNAAAGSLRQLDPAITASR
PLRFFAYAWGAVEPAFEGTQSRVMERFRAWGLPVNPLTLRCTDTDAMLAHYRRIEADRAD
LGYDIDGVVYKVDDLALQRRLGFVSRSPRWALAHKFAAQEAFTVVEDIVINVGRTGSLNP
LAKLRPVTVGGVVVSNATLHNEGYVKGVGGDGEPIREGRDIRVGDTVIVLRAGDVIPKVM
DVVLDKRPADSRPYAFPETCPACGSKAVRAFNPRTKKPDSVRRCTGGLICPAQGLERLKH
FVSRNAFDIEGFGETYIETLYEDGLIRQPADIFRLDFDAVRDALAARRRALADARARQKE
EAARAAGETIRQPKKAARKEERALAIENLFAAIKARRSVALPRFIFGLGIPNVGEVTAKE
LAKVFPDMPALIAAVDAAGACRPGVAWLELDAVERIGPVVRDALLDRVAERSAQGLPPDI
LAAGAVKGLGAAAREKLVAAFGEGEALDAALLRAAGERPCDAYLRFAEGASDVGDVVKDA
LIDFFAEAHNRDAVRALLDAVSTERPEAAAPAGASDLAGKIVVFTGSLERMTRNEAKATA
ERLGAKVASSVSGNTDLVVAGPGAGSKLKEAEKHGVTVLTEAQWLERVGQA
NT seq 2496 nt   +upstreamnt  +downstreamnt
atgccgaactccgccgcgaacgccaccgcgaaaaccgcagaggacgatctgcccggcacc
gaggccgccgcgcgcaccgagcacgcggggctctcggagcggatcgccgaggccgaccgc
ctctattaccaggaggacgcgcccgagatcacggacgccgagtacgaccgcctgcgccgc
cggctggagcgcatcgagggacgcttcccggaactggccggcacgggcgtggcgagcgcc
tcggtcggcgcgaagccctcggagaagttcgccaaggtccggcacgcggtgccgatgctc
tccctcggcaacgccttcgcggacacggaggtggaggagttcgtcgcgcgggtgcggcgc
ttcctgaactggccggattccgagccgctggccttcacggccgagccgaagatcgacggg
ctctccctgtcgctgcgctacgaggacggggtgctcgtcaccgcggcgacgcgcggcgac
ggcgaggtcggcgagaacgtgaccgccaacgcccgcaccgtgcgggacatcccggagcgg
ctgacgggggcgggcgtcccggcggtctgcgaggtgcggggcgaggtctatctcagccac
gcggatttcgccggcatcaacgcgcgccaggaggcgcagggcaagccgctcttcgccaac
ccgcgcaacgccgccgccggatcgctgcgccaactcgacccggccatcacggcctcgcgc
cccttgcgcttcttcgcctatgcctggggcgcggtggagcccgccttcgaggggacgcag
tcgcgggtgatggagcgcttccgggcctggggcctgccggtgaaccccctcaccctgcgc
tgcaccgacacggacgcgatgctcgcccattaccggcggatcgaggccgaccgggccgat
ctcggctacgacatcgacggcgtggtctacaaggtcgacgacctcgccctgcagcgccgg
ctcggcttcgtctcgcgctcgccgcgctgggcgctcgcccacaagttcgccgcccaggaa
gcgttcacggtggtcgaggacatcgtgatcaatgtgggccgcaccggatcgctcaacccg
ctggccaagctccggccggtcacggtcggcggcgtggtcgtgtcgaacgcgacgctccac
aacgagggctacgtgaagggcgtgggcggcgacggggagccgatccgcgagggccgcgac
atccgtgtcggcgacaccgtgatcgtgctgcgggcgggcgacgtcatcccgaaggtgatg
gacgtggtgctcgacaagcggcccgcggattcacggccctacgccttccccgagacctgc
ccggcctgcggcagcaaggcagtgcgcgccttcaacccgcgcaccaagaagccggattcg
gtgcgccgctgcaccggcggcctgatctgcccggcgcaaggcttggagcggctgaagcac
ttcgtctcgcgcaacgccttcgacatcgagggcttcggcgagacctatatcgagacgctc
tacgaggacgggctgatccgccagcccgccgacatcttccggctcgacttcgacgcggtg
cgggacgcgctcgccgcgcgccgccgggcgctcgccgacgctcgcgcccggcagaaggag
gaggcggcgcgcgcggccggcgagacaatccgccaaccgaagaaggcggcgcgcaaggag
gagcgggcgctcgccatcgagaacctgttcgcggcgatcaaggcccggcgcagcgtcgcc
ctgcctcgcttcatcttcgggctcggcatcccgaacgtgggcgaggtgaccgcgaaggaa
ctcgccaaggtattcccggacatgccggccctgatcgcggccgtggacgcggccggcgcc
tgccgcccgggagtcgcgtggctcgaactcgacgcggtggagcggatcggcccggtggtg
cgcgacgcgctcctcgaccgcgtcgcggagcggtcggcgcagggccttccgcccgacatc
ctcgcggcgggtgccgtgaaggggctgggcgccgccgcgcgcgagaagctggtcgccgcc
ttcggagagggcgaagccctcgacgcggccctgctgcgcgcggccggcgagcggccctgc
gacgcctatctgcgcttcgccgaaggggcgagcgatgtcggcgacgtggtgaaggacgcg
ctcatcgatttcttcgcggaggcgcacaaccgcgacgccgtccgggcgctcctcgacgcg
gtcagcaccgagcggccggaggcggcggcaccggccggcgccagcgaccttgccggcaag
atcgtggttttcaccggcagcttggagcggatgacccgcaacgaggccaaggcgaccgcc
gagcggctcggcgcgaaggtcgcctcctccgtctccggcaacaccgacctcgtggtggcg
ggaccgggcgctggctcaaagctgaaggaggcggagaagcacggcgtcacggtgctgacc
gaggcgcagtggctggagcgcgtcggtcaggcctga

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