Methylobacterium radiodurans: DK427_22905
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Entry
DK427_22905 CDS
T05919
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
meti
Methylobacterium radiodurans
Pathway
meti03030
DNA replication
meti03410
Base excision repair
meti03420
Nucleotide excision repair
meti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DK427_22905
03410 Base excision repair
DK427_22905
03420 Nucleotide excision repair
DK427_22905
03430 Mismatch repair
DK427_22905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meti03032
]
DK427_22905
03400 DNA repair and recombination proteins [BR:
meti03400
]
DK427_22905
Enzymes [BR:
meti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DK427_22905
DNA replication proteins [BR:
meti03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DK427_22905
DNA repair and recombination proteins [BR:
meti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DK427_22905
NER (nucleotide excision repair)
GGR (global genome repair) factors
DK427_22905
MMR (mismatch excision repair)
DNA ligase
DK427_22905
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DK427_22905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
TatA_B_E
Motif
Other DBs
NCBI-ProteinID:
AWN39179
UniProt:
A0A2U8VZD9
LinkDB
All DBs
Position
4880764..4883259
Genome browser
AA seq
831 aa
AA seq
DB search
MPNSAANATAKTAEDDLPGTEAAARTEHAGLSERIAEADRLYYQEDAPEITDAEYDRLRR
RLERIEGRFPELAGTGVASASVGAKPSEKFAKVRHAVPMLSLGNAFADTEVEEFVARVRR
FLNWPDSEPLAFTAEPKIDGLSLSLRYEDGVLVTAATRGDGEVGENVTANARTVRDIPER
LTGAGVPAVCEVRGEVYLSHADFAGINARQEAQGKPLFANPRNAAAGSLRQLDPAITASR
PLRFFAYAWGAVEPAFEGTQSRVMERFRAWGLPVNPLTLRCTDTDAMLAHYRRIEADRAD
LGYDIDGVVYKVDDLALQRRLGFVSRSPRWALAHKFAAQEAFTVVEDIVINVGRTGSLNP
LAKLRPVTVGGVVVSNATLHNEGYVKGVGGDGEPIREGRDIRVGDTVIVLRAGDVIPKVM
DVVLDKRPADSRPYAFPETCPACGSKAVRAFNPRTKKPDSVRRCTGGLICPAQGLERLKH
FVSRNAFDIEGFGETYIETLYEDGLIRQPADIFRLDFDAVRDALAARRRALADARARQKE
EAARAAGETIRQPKKAARKEERALAIENLFAAIKARRSVALPRFIFGLGIPNVGEVTAKE
LAKVFPDMPALIAAVDAAGACRPGVAWLELDAVERIGPVVRDALLDRVAERSAQGLPPDI
LAAGAVKGLGAAAREKLVAAFGEGEALDAALLRAAGERPCDAYLRFAEGASDVGDVVKDA
LIDFFAEAHNRDAVRALLDAVSTERPEAAAPAGASDLAGKIVVFTGSLERMTRNEAKATA
ERLGAKVASSVSGNTDLVVAGPGAGSKLKEAEKHGVTVLTEAQWLERVGQA
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgccgaactccgccgcgaacgccaccgcgaaaaccgcagaggacgatctgcccggcacc
gaggccgccgcgcgcaccgagcacgcggggctctcggagcggatcgccgaggccgaccgc
ctctattaccaggaggacgcgcccgagatcacggacgccgagtacgaccgcctgcgccgc
cggctggagcgcatcgagggacgcttcccggaactggccggcacgggcgtggcgagcgcc
tcggtcggcgcgaagccctcggagaagttcgccaaggtccggcacgcggtgccgatgctc
tccctcggcaacgccttcgcggacacggaggtggaggagttcgtcgcgcgggtgcggcgc
ttcctgaactggccggattccgagccgctggccttcacggccgagccgaagatcgacggg
ctctccctgtcgctgcgctacgaggacggggtgctcgtcaccgcggcgacgcgcggcgac
ggcgaggtcggcgagaacgtgaccgccaacgcccgcaccgtgcgggacatcccggagcgg
ctgacgggggcgggcgtcccggcggtctgcgaggtgcggggcgaggtctatctcagccac
gcggatttcgccggcatcaacgcgcgccaggaggcgcagggcaagccgctcttcgccaac
ccgcgcaacgccgccgccggatcgctgcgccaactcgacccggccatcacggcctcgcgc
cccttgcgcttcttcgcctatgcctggggcgcggtggagcccgccttcgaggggacgcag
tcgcgggtgatggagcgcttccgggcctggggcctgccggtgaaccccctcaccctgcgc
tgcaccgacacggacgcgatgctcgcccattaccggcggatcgaggccgaccgggccgat
ctcggctacgacatcgacggcgtggtctacaaggtcgacgacctcgccctgcagcgccgg
ctcggcttcgtctcgcgctcgccgcgctgggcgctcgcccacaagttcgccgcccaggaa
gcgttcacggtggtcgaggacatcgtgatcaatgtgggccgcaccggatcgctcaacccg
ctggccaagctccggccggtcacggtcggcggcgtggtcgtgtcgaacgcgacgctccac
aacgagggctacgtgaagggcgtgggcggcgacggggagccgatccgcgagggccgcgac
atccgtgtcggcgacaccgtgatcgtgctgcgggcgggcgacgtcatcccgaaggtgatg
gacgtggtgctcgacaagcggcccgcggattcacggccctacgccttccccgagacctgc
ccggcctgcggcagcaaggcagtgcgcgccttcaacccgcgcaccaagaagccggattcg
gtgcgccgctgcaccggcggcctgatctgcccggcgcaaggcttggagcggctgaagcac
ttcgtctcgcgcaacgccttcgacatcgagggcttcggcgagacctatatcgagacgctc
tacgaggacgggctgatccgccagcccgccgacatcttccggctcgacttcgacgcggtg
cgggacgcgctcgccgcgcgccgccgggcgctcgccgacgctcgcgcccggcagaaggag
gaggcggcgcgcgcggccggcgagacaatccgccaaccgaagaaggcggcgcgcaaggag
gagcgggcgctcgccatcgagaacctgttcgcggcgatcaaggcccggcgcagcgtcgcc
ctgcctcgcttcatcttcgggctcggcatcccgaacgtgggcgaggtgaccgcgaaggaa
ctcgccaaggtattcccggacatgccggccctgatcgcggccgtggacgcggccggcgcc
tgccgcccgggagtcgcgtggctcgaactcgacgcggtggagcggatcggcccggtggtg
cgcgacgcgctcctcgaccgcgtcgcggagcggtcggcgcagggccttccgcccgacatc
ctcgcggcgggtgccgtgaaggggctgggcgccgccgcgcgcgagaagctggtcgccgcc
ttcggagagggcgaagccctcgacgcggccctgctgcgcgcggccggcgagcggccctgc
gacgcctatctgcgcttcgccgaaggggcgagcgatgtcggcgacgtggtgaaggacgcg
ctcatcgatttcttcgcggaggcgcacaaccgcgacgccgtccgggcgctcctcgacgcg
gtcagcaccgagcggccggaggcggcggcaccggccggcgccagcgaccttgccggcaag
atcgtggttttcaccggcagcttggagcggatgacccgcaacgaggccaaggcgaccgcc
gagcggctcggcgcgaaggtcgcctcctccgtctccggcaacaccgacctcgtggtggcg
ggaccgggcgctggctcaaagctgaaggaggcggagaagcacggcgtcacggtgctgacc
gaggcgcagtggctggagcgcgtcggtcaggcctga
DBGET
integrated database retrieval system