Mycobacteroides saopaulense: MYCSP_15265
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Entry
MYCSP_15265 CDS
T05445
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msao
Mycobacteroides saopaulense
Pathway
msao03030
DNA replication
msao03410
Base excision repair
msao03420
Nucleotide excision repair
msao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MYCSP_15265
03410 Base excision repair
MYCSP_15265
03420 Nucleotide excision repair
MYCSP_15265
03430 Mismatch repair
MYCSP_15265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msao03032
]
MYCSP_15265
03400 DNA repair and recombination proteins [BR:
msao03400
]
MYCSP_15265
Enzymes [BR:
msao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MYCSP_15265
DNA replication proteins [BR:
msao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MYCSP_15265
DNA repair and recombination proteins [BR:
msao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MYCSP_15265
NER (nucleotide excision repair)
GGR (global genome repair) factors
MYCSP_15265
MMR (mismatch excision repair)
DNA ligase
MYCSP_15265
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MYCSP_15265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ALR12538
LinkDB
All DBs
Position
complement(3094960..3097005)
Genome browser
AA seq
681 aa
AA seq
DB search
MDPDVQRQWRELADEVRGHQFRYYVKDAPVVSDGEFDRLLKELEALEAQYPELQTPDSPT
QLVGGAGFVTEFGSVDHLERMLSLDNAFSSEELTAWDARVRGDIGEEPEYLCELKIDGVA
LSLVYENGVLVRGATRGDGRSGEDVTLNAKTIEDVPERLTASREYPIPALLEVRGEVFFR
LEDFEVLNASLVEEGKPPFANPRNSAAGSLRQKNPAITARRRLRMICHGLGRAEGFAPES
LHEAYLALGQWGLPVSTHTTKVRGVAKVQERVNYWAEHRHDVEHEIDGLVVKVDAVALQR
RLGSTSRAPRWAIAYKYPPEEATTELLDIRVSVGRTGRVTPFAYMTPVKVAGSTVSLATL
HNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVADLRSGSEREFVMPTTCPECGTTLAHE
KEGDADIRCPNSRSCPAQLRERVFHVAGRGAFDIEALGYEAAVALLSAGVIEDEGDLFSL
TADDLLRTDLFKTKNGSLSANGSRLLDNLDKAKQQQLWRVLVALSIRHVGPTAARALATE
FGELEAIEAASVEQLAAVEGVGSTIAAAVVDWFTVDWHRAIVDKWRAAGVRMADERDESI
PRNLEGLSIVVTGSLPGFSRDEAKEAIIARGGKSASSVSKKTAFVVVGDSPGSKYDKAVE
LGLTILDEDGFRALLADGPPA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
gtggatcctgacgtgcagcgccagtggcgtgagcttgccgacgaggtgcgtgggcaccaa
ttccgctactacgtcaaggacgccccggtcgtctccgatggcgagttcgatcgcctcctg
aaggagcttgaggcgctggaagcacagtatcccgagttgcagaccccggactcacccacg
cagctggtgggtggagcgggatttgtcaccgaattcggatcggtcgaccacctggagcga
atgctcagtctggacaacgcattcagttccgaggagttgacggcctgggatgcccgagta
cgcggcgatatcggggaagaaccggaatacctgtgcgagctgaagatcgacggggtcgcg
ctttcgttggtgtacgagaacggtgtgctggtgcgcggcgcgacgcgtggagacggccgc
agcggcgaggatgtcaccctgaacgccaagaccatcgaggatgtaccggaaaggcttacg
gcctcaagggaatacccgatacccgcgctcttggaggtgcgtggcgaggtcttcttccgg
ctggaggatttcgaggtgttgaatgcctcgttggtggaggagggcaagccgccgttcgcc
aatccgcgcaacagcgccgcgggcagcctgcggcagaagaaccctgcgatcaccgccagg
cggcgtctgcggatgatctgccacggtcttggccgcgccgagggtttcgctccggagagc
ctgcacgaggcctatttggctttggggcagtggggtttacctgtctctactcacaccacg
aaggttcgcggcgtggcgaaggtgcaggaacgtgtcaactactgggccgagcaccggcac
gatgtggagcacgagatcgacgggttggtcgtcaaggtcgacgccgtggccctgcagcgc
cgccttggcagcacctcgcgcgcgccgcgctgggcgatcgcctacaagtacccgcctgag
gaggcgacgaccgagctgctcgacatcagggtgagcgtggggcgcaccgggcgggtgaca
ccgtttgcgtacatgactccggtcaaggtggccggatcgacggtgtcgctggcgaccctg
cacaacgcgtccgaggtcaaacgcaagggcgtgctgatcggtgacactgtggtcatccgc
aaggccggtgacgtcatccccgaggtgctgggcccggtcgccgatctgcgaagcggatcc
gagcgtgaattcgtcatgcccacaacatgtcccgaatgcggtaccacattggcgcacgag
aaggagggcgatgccgacattcgctgccccaactcgcgcagctgcccggcgcaattgcgc
gagcgggtgttccatgtggcggggcgcggcgccttcgacatcgaggcgctcggttacgag
gctgccgtcgctttgctctcggcaggggtgatcgaggacgaaggtgatttgttcagcctt
accgccgatgacttgctgcgcacagatctgttcaagaccaagaacgggtcgttgtccgcc
aacggaagccggctgctggacaacttggacaaggcgaagcagcagcaactgtggcgggtg
ttggtggcactgtcgattcggcacgtcggcccaaccgccgcgcgggccttggccaccgag
ttcggcgaactggaggccatcgaggcggcctctgtcgaacagctggcagccgtcgaaggc
gtgggttccacgatcgccgcggccgtggtggattggttcaccgtggattggcatcgcgcc
atcgtcgacaagtggcgcgccgcgggggtgcggatggccgatgagcgcgatgagtcgata
ccacgcaacctggaagggttgtccatcgtcgtaacgggttcgctccctgggttttcccgc
gatgaggccaaggaagccatcatcgcccggggtggcaagtccgcgagctcggtgtcgaag
aagacggcgttcgtcgtcgtcggtgactcgccggggtccaagtacgacaaggccgtagag
ctggggttgaccatcctcgacgaggacggcttccgggcgttgctcgccgacgggcccccc
gcgtag
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integrated database retrieval system
