Nocardia asteroides: NCTC11293_04176
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Entry
NCTC11293_04176 CDS
T06742
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nad
Nocardia asteroides
Pathway
nad03030
DNA replication
nad03410
Base excision repair
nad03420
Nucleotide excision repair
nad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC11293_04176 (ligA_1)
03410 Base excision repair
NCTC11293_04176 (ligA_1)
03420 Nucleotide excision repair
NCTC11293_04176 (ligA_1)
03430 Mismatch repair
NCTC11293_04176 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nad03032
]
NCTC11293_04176 (ligA_1)
03400 DNA repair and recombination proteins [BR:
nad03400
]
NCTC11293_04176 (ligA_1)
Enzymes [BR:
nad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC11293_04176 (ligA_1)
DNA replication proteins [BR:
nad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC11293_04176 (ligA_1)
DNA repair and recombination proteins [BR:
nad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC11293_04176 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC11293_04176 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
NCTC11293_04176 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC11293_04176 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
DNA_ligase_ZBD
IclR
RNA_ligase
HHH
PTCB-BRCT
DUF4164
Motif
Other DBs
NCBI-ProteinID:
VEG35837
LinkDB
All DBs
Position
1:complement(4407088..4409079)
Genome browser
AA seq
663 aa
AA seq
DB search
METGERIRELADRIVVLREAYYQGSPLVADAEYDAVEDELRGLIEAHPEHTPDPNPLEQV
GAPGVLHAPVRHSRPMLSLEKATKPEQVEAFFQRFPGQPVVVMPKLDGLSLALVFENGRF
ARAVTRGDGTTGDDVTVLVRALVDGIPDRIEVAGRVEVRGEAVMLRSTFTAYNLAHPDKP
LINPRNAAAGTLRAKDPATVAERRLQFFGFDLDTAGDDTAVDLAEGLRALGIAGAQMRLC
ADAAQAQTAITAIEQDRNTLDYDLDGAVLRLADRNAYAAAGTRSNSPRGALAFKFAAEEK
TTLLNEVVWDVGKTGKIVPVAWLEPVFVGGTTVTKATLANQEVIRARDIKVGDTVLVRRA
GDVIPFVAGVLDASRRTGQEREIVAPTVCPSCAQPVTEQGNSRELFCTNVSCPAQTVRRL
IHWASRSAADIDAVGPVWIERLAEAGILEHPSDFYTLTKERLLEFDRVGEVSAARMIDSI
DASRQVGLRRALIGLAIPMASDGTAARLARAGFGSLEEVADAGEERLVAVEDIGPKVAAS
LTEHLSRLRPELERLRAAGVSLDVRAEDLPPVIAAGAPLAGKTVVVTGAISDPRSGEKVA
RPTFQRLCEQAGATAASSVSANTDLLITGAGVGDSKLSKAEKLGVEVVDQGDIWTLLIEA
KIT
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggaaacaggggaacgtattcgtgagctggcggaccggatcgtcgtgttgcgcgaggcc
tactatcagggctcgccgctggtcgcggacgccgagtacgacgcggtcgaggacgagctg
cgcggcctgatcgaggcgcatccggagcacacgcccgacccgaatccgctcgagcaggtc
ggggcgccgggcgtgctgcacgcgccggtccggcactcgcggccgatgctgtcgctggag
aaggcgacgaaaccggagcaggtcgaggcgttcttccagcgctttcccggacagccggtg
gtggtgatgcccaagctcgacgggttgtcgctggcgctggtcttcgagaacgggcgcttc
gcgcgcgcggtcacccggggtgacgggacgaccggcgacgacgtcaccgtgctggtccgc
gccctggtcgacggcatccccgaccggatcgaggtcgcgggccgggtggaggtgcgcggc
gaggccgtcatgctgcgctccaccttcaccgcctacaacctcgcgcacccggacaagccg
ctcatcaatccgcgcaacgccgcggcgggcacgctgcgcgcgaaggaccccgccaccgtc
gccgaacgccgtctgcagttcttcggcttcgatctggacaccgcgggcgacgacaccgcc
gtcgacctggccgaaggcctgcgcgcactcggcatcgccggcgcccagatgcggctgtgc
gccgacgccgcccaggcgcagaccgcgatcaccgcgatcgaacaggaccgcaacaccctc
gactacgacctcgacggcgccgtcctgcgcctggccgaccgcaacgcctacgccgcggcc
ggcacccgctcgaactccccgcgcggcgcgctggcgttcaagttcgccgccgaggagaag
accacgctgctcaacgaggtggtctgggacgtcggcaagacgggcaagatcgtcccggtg
gcctggctcgaacccgtcttcgtcggcggcaccaccgtcaccaaggcgaccctggccaac
caggaagtgatccgcgcccgcgacatcaaggtcggcgacacggtgctggtgcgccgcgcc
ggcgatgtgatcccgttcgtggcgggggtactcgacgcgtcccggcgcaccggtcaggaa
cgcgagatcgtcgcgcccaccgtctgcccgtcctgcgcgcagccggtcaccgagcagggc
aacagccgggaactgttctgcaccaacgtgtcctgtcccgcgcagaccgtgcgcaggctc
atccactgggcctcgcgatcggcggccgacatcgacgcggtcgggccggtctggatcgag
cgcctcgccgaggcgggcatcctggaacacccgtcggacttctacacgctgaccaaggaa
cgcctgctcgagttcgaccgcgtcggcgaggtgtccgcggcccggatgatcgactcgatc
gatgccagcaggcaggtcggcctgcggcgggcgctgatcggcctggcgatcccgatggcc
tccgacggcaccgccgcccggctggcccgcgcggggttcggctccctggaagaggtcgcc
gacgcgggcgaggagcggctcgtcgccgtcgaggacatcgggcccaaggtggccgcctcg
ctcaccgaacacctgtccaggctgcgcccggaactggaacggctgcgcgccgccggtgtc
tcgctggacgtgcgcgccgaggacctgccgcccgtcatcgccgcgggtgcgccgctggcg
ggcaagaccgtggtcgtcaccggcgccatcagcgacccgcgttccggcgagaaggtcgcc
cggcccaccttccagcggctgtgcgagcaggcgggcgccaccgcggcgtcctcggtctcg
gccaacaccgacctgctcatcaccggcgccggcgtcggcgacagcaagctgagcaaggcg
gagaagctcggcgtcgaggtggtcgaccagggcgacatctggacgctgctgatcgaggcc
aagatcacctag
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integrated database retrieval system
