KEGG   Notothenia coriiceps (black rockcod): 104948407
Entry
104948407         CDS       T04920                                 
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase-like isoform X1
  KO
K20813  thymine-DNA glycosylase [EC:3.2.2.29]
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    104948407
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ncc03400]
    104948407
Enzymes [BR:ncc01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.29  thymine-DNA glycosylase
     104948407
DNA repair and recombination proteins [BR:ncc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     104948407
SSDB
Motif
Pfam: UDG AT_hook TFIIA
Other DBs
NCBI-GeneID: 104948407
NCBI-ProteinID: XP_010772904
UniProt: A0A6I9N4T6
LinkDB
Position
Unknown
AA seq 422 aa
MEENQYTSLTVPTDYFQQWYQSSQQHPEAQYVMPYNNMGFYTEGPRDEPVMAELSVHRDP
PVHQEPFYQNFNPPAQNQYHELTYQPNLREQQQQQHPGHMHPPQQQHTAQQQQQEPSVQL
QPQPAATPQVATPVKKKRGRPPKQQTEDGKSTEEENEIEAAKKAKRALNRFNGMSVEEVM
TKTLPDVITYNLDILIIGINPGLLSAYKGRHYPNPGNHFWKCLFLSGLTDEQLNFMHDQS
LPETYSIGFTNMVERTTPGSKDLSSKEIREGGRQLLDKLQKYRPLIAAFNGKGIYEIFCK
ETFGVKAKKLDFGLQPYKIPETETVCYLMPSSSPRCAQFPRAQDKVHFYIKLKELRDEMK
GLIPKREVEETEYLFDLQLAKEDAKRISIKEEQVDPEYESSNALPGGEKQSSDEKQSSNS
SK
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggaagaaaaccagtatacatcactgacggttcctacggattattttcagcagtggtac
cagtccagtcagcagcaccctgaggctcagtatgtgatgccctataacaacatgggcttc
tacacagagggtcccagagatgagcccgtcatggcggagctgtccgtccaccgggatcct
cctgttcaccaggaacctttctaccagaacttcaaccccccggcccagaatcagtaccac
gagctgacctaccagcccaacctcagggagcagcagcagcagcagcaccctggacacatg
cacccccctcagcagcaacacacagcccagcagcagcagcaggagcccagcgtgcagctc
caacctcagcctgctgctacacctcaagtggctacgccggtgaagaagaagcgcggccgg
cctccgaagcagcagacagaagatggaaagtcgaccgaggaggagaacgagatcgaggca
gcgaaaaaagccaaacgggctctgaaccgcttcaacggcatgtcagtggaggaggtgatg
accaaaaccctgccggacgtcatcacctacaacctggacatcttgataattggaattaac
ccgggactgctgtcggcgtacaaaggacgccattacccgaacccaggaaaccatttctgg
aaatgtctgtttctctctggtctgactgacgagcagctcaacttcatgcacgaccagagc
ctgccggagacatacagcatcggcttcaccaacatggtggagaggaccacacccggcagc
aaggacctctccagtaaggagattcgtgaaggaggtcgacagttactcgacaagctgcag
aaatacagacctttaatagctgctttcaatggaaaaggtatttatgaaatcttctgcaaa
gaaacgtttggtgtgaaggcaaagaaactcgacttcggtctacagccttacaaaatccca
gaaactgaaacagtgtgctacctgatgccctcgtccagccctcgctgtgcacagttcccc
cgtgcgcaggataaggttcatttctacatcaagctgaaggagctgcgggacgagatgaag
ggtctgatcccgaagcgcgaggtggaggagacggagtacctgttcgatctgcagctagcc
aaagaggatgcaaagaggatatcaatcaaagaggagcaggtggatccggagtatgaaagc
tctaatgcgctacccgggggcgagaagcaaagcagcgacgagaagcaaagcagcaactcc
tccaagtaa

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