Niabella soli: NIASO_13960
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Entry
NIASO_13960 CDS
T03682
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nso
Niabella soli
Pathway
nso03030
DNA replication
nso03410
Base excision repair
nso03420
Nucleotide excision repair
nso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIASO_13960
03410 Base excision repair
NIASO_13960
03420 Nucleotide excision repair
NIASO_13960
03430 Mismatch repair
NIASO_13960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nso03032
]
NIASO_13960
03400 DNA repair and recombination proteins [BR:
nso03400
]
NIASO_13960
Enzymes [BR:
nso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NIASO_13960
DNA replication proteins [BR:
nso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIASO_13960
DNA repair and recombination proteins [BR:
nso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NIASO_13960
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIASO_13960
MMR (mismatch excision repair)
DNA ligase
NIASO_13960
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIASO_13960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AHF15960
UniProt:
W0EYR3
LinkDB
All DBs
Position
3020392..3022485
Genome browser
AA seq
697 aa
AA seq
DB search
MYTKEQTIQLQNATLSFLKEGEQPATAEQLEALRKVLRFHEYRYYVLDDPLLADGEYDQL
FKFLEAVETAHPAWITKDSPSQRVGKSLNGNFVTVPHLVPMLSLDNSYNSEDLKDFDRKV
IQLSKTSKVTYCVEPKFDGGSISLIYEDDLLVRGATRGNGVAGDDITTNVKQIRSVPLSA
AFSSYGIQQIEIRGEVLINKNNFKKYNADLAEKGLAPLANPRNAASGTLRIKDPAEVRRR
HLETFVYSIGYYTLLPGHELPEALKTHEASLRLLWELGFRSPVKELKTFDHIDPVIDYCL
AFEESRDNLPYEIDGMVIKVNNIALQDVLGMTSHHPRWAIAFKFKARQATSKLLEVKFQV
GRTGSITPVAKIEPVFIGGVTVSSISLFNEEVIREKDLKIGDSVLVERAGDVIPYIVKSL
EDLRTGQEKEIEFPKTCPVCGSKLFKEAEEAVWRCINIECPAQVMERMIHFVSKDALDIR
GFGEANVRKFYELGWLTDIPGIYKLDYEKLGTLEGFGKRSVENLQQAIEKSKEQPLHRII
FGLGIRFVGETTAKVLANKVHHLLDLAQFTQEALQDLEDIGPKVAGSIVHFFSTPANIEM
IKELETLGVQLTNTHKQLTADGNLTGHTFLFTGTLPTLKRSDAEAMAEAQGGKILSGVSS
KLNYLVVGEDAGSKLDKAKKLNTVKIISEAEFLKMIQ
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtacacaaaggaacaaacaatacaattgcagaacgcaaccctgtcttttcttaaagaa
ggcgaacagccggctaccgctgaacaactggaagccttacggaaggtattgcgctttcat
gaataccggtactacgtgttggatgatcctttactggcggatggtgagtacgaccagtta
tttaaattcctggaagctgttgaaactgcccatccggcctggatcacgaaggattctccc
tcccaacgtgtaggtaaaagcctcaatggcaattttgttaccgttccgcacctggtaccc
atgctgtcattagacaactcctacaacagtgaggatctgaaagattttgaccgtaaagta
atacaactttcaaaaacaagtaaagtcacgtattgtgtagagcccaagtttgacggggga
agcatttcattgatctatgaagacgacctgctggtgcgcggcgccacccggggcaacggg
gttgcgggcgatgacattaccaccaatgttaaacagatacgctccgtacccctgtctgca
gctttcagtagctacgggatacagcaaatagagataagaggagaagtattaatcaataaa
aataattttaaaaagtataatgccgatctcgcagaaaaaggcttagccccgctggccaac
ccgcgcaatgcggcatccggcaccctgcgcataaaagatcctgccgaagtaagaaggcgc
cacctggaaacctttgtttacagcatcggctattacaccttactgccgggacacgagctt
cccgaagcgctgaaaacacatgaagcctctttacgattactatgggagcttggcttcaga
agcccggtaaaagaactaaaaacttttgaccatattgacccggtgatcgattattgtctt
gcgtttgaagaaagccgggacaacctgccttatgaaatagatggcatggtcattaaagtg
aacaatatagccctgcaggacgtcctgggtatgacctcccatcatccccgctgggccatt
gccttcaaattcaaagcccggcaggcaaccagcaaattacttgaggtaaaattccaggta
gggcgcaccggttccattacacctgtggccaagatcgaacccgtttttatcgggggcgtt
accgtcagctccatctccctttttaatgaagaagtgatccgggaaaaagatctgaagatc
ggcgattcggtactggtagagcgcgcgggcgacgtgatcccctacatcgtaaaatcgctg
gaagacttgaggacaggccaagaaaaggagatcgaatttccaaaaacgtgcccggtttgc
ggcagcaaattatttaaggaagcagaagaagccgtctggcgctgtattaatatagaatgc
cccgcccaggtgatggaacggatgatccattttgtaagcaaggacgcgctggacatccgc
ggctttggcgaagccaacgtgcgcaaattttatgagctgggatggctgaccgatatcccc
ggcatttataaactggactatgaaaagctgggaacgttggaaggttttgggaaaagatcg
gtagagaacctgcagcaggcgattgaaaaaagtaaagaacagcccttgcaccgcatcatt
tttggcctgggaatccgctttgttggggaaaccactgccaaggtgctggcaaataaggtc
catcacttactggacctggcacaattcacgcaggaagcattacaggacctggaagatata
ggccccaaagtagcaggcagtattgttcattttttcagcaccccagctaatattgaaatg
atcaaagaactggaaacgctgggcgtgcaattaacaaatacccacaaacagttaactgct
gacggcaatcttaccggtcacacgtttttatttaccggcaccctgcccacccttaaacgc
agcgatgccgaagccatggcggaagcccagggcggcaaaatactgagcggcgtcagctcc
aaactgaattacctggtagtgggggaggatgcgggcagtaagctggataaagccaaaaaa
ttaaataccgtaaaaattatttcagaggctgagtttttaaaaatgatacagtaa
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integrated database retrieval system
