KEGG   Nicotiana tomentosiformis: 104089997
Entry
104089997         CDS       T05025                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X2
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104089997
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nto03021]
    104089997
Enzymes [BR:nto01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104089997
Transcription machinery [BR:nto03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     104089997
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 104089997
NCBI-ProteinID: XP_009593318
LinkDB
Position
Unknown
AA seq 1211 aa
MIFDESNRLYRKLIDFRGTANDLSMCVFNRIKVSKIRAERSLTNDPNAPATGLKYVKELV
LAKRTNHAFRMVVVGDPNIKLGEIGIPCHVAEDLHMAEPLSSRNWEKLTDHCDLMILQKG
AIHVRRNGVLVRISVMDQLQRGDIIYRPLIDGDVVLINRPPSIHQHSLIALSVRILPIIS
VLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQLIDGQSGQNLLSLSHD
SLTAAHLVLEGGVFLDRFQVQQLQMFCPHQVGMPAIVRAPSRNRSYWTGKQLFSLFLPSD
LDCDFPSNGVCISDGEIVTSSGGSSWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEW
LSMRGLSVSLSDLYISSDPYSRENMIDEVFCGLQEAERLSYIQLLMSRYNHDFLAGSLEV
SQKAMGFNLEFMSIMQQKSASLSQASVSSFKHVFRDIQNLVYNYASKENSFLAMLKAGSK
GNLLKLVQHSMCLGLQQSLVPLSFRMPRRLSCDAWNNHKAHLPFEKAHNVPERPGPYIPC
AVVENSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYSGYDGTVRNA
YGNQIVQFSYYSADQISSTYNRASHAIGGHPVGSLAACAISEAAYSALDLPVGALEPSPL
LNLKKILEAGVKSNSSEKTATLFLSRRLGRWAHGFEYGAIEVKGHLERLLLSDIVSTVMI
CFSPETCKSTHSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSLHI
TCKDCSAAEMQKANSKICITVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKKVD
ILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEQSHPDNV
HDLTVAYGVDVAWKYFLRNLNSAVSETGKKILLEHLVLAADCLTATGEFVPLNTKGLAQQ
RKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDIIYS
GKGYEPAAPTDVYALLGNHVTSNRQQVKVTLDEDNETADKALARRLCKLDDLNTKRCKSQ
WSIANLRSFLSFNDIKKLSQALKQMLSKYAIDRELSEADKSIVMMALHFHPRRSEKIGKG
AMEIKIGYHKEYEDSRCFMLVRTDGTVEDFSYRKCLQHALELIAPQKAKTYKWLNGASRG
PTASSLQNEVK
NT seq 3636 nt   +upstreamnt  +downstreamnt
atgatatttgatgagagtaataggctttacagaaagctgattgacttcagagggacagca
aatgacttgagcatgtgtgtttttaatagaattaaagtttccaagatacgtgcggagagg
tcactaaccaacgatcctaatgcccctgctactggtttgaagtatgtgaaagaactggtt
ctggcaaaacgcactaaccatgctttccgcatggttgtggttggtgatcccaacataaag
ctaggtgagattggtattccgtgtcatgttgcggaggatctccatatggcggaaccccta
agttcacggaactgggaaaagttgactgatcactgtgatcttatgattcttcagaagggg
gcgattcacgttcgtagaaatggtgtcttagttcgtattagtgtaatggatcagttgcag
agaggggatataatatatagacctcttattgatggagatgttgtgttgataaatcgacct
ccatctattcatcaacactcactaattgctctgtctgttaggattcttccaataatttct
gttctttcaatcaatcctcttgtctgttctccattccgtggggattttgatggtgattgc
cttcatggttatgttccgcaatcaatcgattctagggttgagcttagtgagcttgttggt
ctgaatcggcagctgatcgacggacagagtggccaaaatcttctttcgttaagtcatgac
agcttaactgctgctcatttagttttggaaggaggagttttcttggaccgtttccaggtg
cagcagctacaaatgttttgtcctcatcaagtggggatgcctgctattgtacgggcacca
tcaagaaacaggagttattggactgggaaacagttattcagcttgtttttgccatctgac
cttgactgtgattttccatcaaatggcgtctgtattagtgatggggaaattgtgacatct
tccggcggttcttcttggctgcgtgatgccagtgaaaatctcttttatagtcttgttaaa
caccatggaggtgacactcttgacctcctttatgctgcacaagcagttctttgtgagtgg
ttgtcaatgaggggtcttagtgtttcattgtccgatctttacatctcttctgatccatat
tcccgagaaaatatgattgatgaagtcttttgcggtttgcaagaggcagagcgactatct
tatatccaactgctgatgtcgaggtataatcacgatttccttgccggaagcctagaagta
agccagaaagccatgggttttaatttggagtttatgtctatcatgcagcagaagtcagct
tctctgagtcaagcttctgttagttctttcaagcatgtttttcgggatatccagaattta
gtatataattatgcaagcaaggagaattcgtttctggctatgttaaaagctgggagtaag
ggcaacctgctaaaactggtccaacacagcatgtgtcttggtttgcagcagtctttggtt
ccattatcgtttagaatgccgcgtcgactttcttgtgatgcatggaataatcataaagca
catcttccttttgagaaagctcataatgttcctgaacgtcctggtccttacatcccgtgt
gctgtggttgagaattcatttcttgcgggtttgaatcctctagagtgtttcgtgcattca
ttgacaacccgtgatagttcttttagtggacatgctgatgtttctggaacattgaaccgt
aagcttatgtttttcatgcgtgatctgtacagtggatacgatggaacagtgagaaatgct
tacgggaatcaaattgtgcagttctcttactacagcgcagaccaaatttcttctacatat
aaccgtgcttctcatgcaattggtggccatcctgttggttcactggcagcctgtgccatt
tcagaagctgcatacagtgctttggatctacctgtcggtgcacttgagccatcaccttta
ctaaacctaaagaaaatattggaagctggagtaaagagtaatagtagcgagaaaactgca
actctgtttctttcgagaagacttggcagatgggctcatggttttgaatatggagctata
gaggtcaagggtcatctagaaaggcttcttctttcagatattgtttcgaccgtaatgata
tgcttctcccctgaaacatgtaaaagcactcacagtagtccctgggtttgtcattttcat
atagataaggaatatgtgaagacaagaaggctgaagctgaaatcagtaatagatgctctt
aatatgagatatagatcaactagaatggaagctggaattgatcttccaagcctgcatata
acatgcaaggattgttcagccgctgaaatgcaaaaagcgaattccaaaatttgcatcaca
gttgctgtggttgagacctcaaaagattctttttcactactggatacacttcgtgatttg
gtgattccattccttcttgagactgtgatcaaaggtttctccgcatttaaaaaagttgat
atcttatggagagagttgccaagtacatcaaaatcttccagaggctctaccggggaacta
tatttgcaggtcttcatgtcggaaagttgtgaccggaacaacttttggaatgcacttgtg
gatagttgcctccatataatggatttgattgattgggagcagagtcatcccgataacgtc
catgatctgactgtagcctatggagttgatgtagcatggaagtactttctacgtaatcta
aattctgctgtctctgaaactggcaagaaaatccttctggaacacttggtacttgcagca
gattgtctcacagctacaggagaatttgttcccttgaatacaaaagggctggcacagcaa
agaaagtgtgctggtgttatttcaccatttatgcaagcgtgcttttcgcatcccggggac
tcttttgttagggctgccaagacagaattaagtgatgatcttcaaggaagtctggaagca
ttggcgtggggaaaaactccttccacagggactggtttttcatttgacattatctattct
ggaaagggatatgagcctgctgcaccaacagatgtgtatgctctgctgggcaaccatgtc
acatcaaataggcaacaggtgaaggtcactcttgacgaagacaatgaaacggctgacaag
gctcttgcacgacgtctttgtaaacttgatgatctcaatacaaagagatgtaaaagccag
tggtcaattgcaaatttgagaagtttcctttcattcaatgacataaagaagctctctcag
gcattgaagcaaatgttgtccaaatatgctattgatcgcgagttaagtgaagcagacaag
tccatagtaatgatggcattacattttcatcccagaaggagtgagaagatcggaaaagga
gcaatggaaataaagattggttaccacaaagaatatgaagattcccgttgctttatgttg
gtacgtacagatggaacagttgaagatttctcgtatcgtaagtgtctacaacatgctctg
gaactaattgctcctcaaaaggcaaaaacctataaatggttgaatggagcatcgcgtggt
cccactgcctcatccttgcaaaatgaggtcaagtaa

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