Ochotona princeps (American pika): 101520572 Help Entry 101520572         CDS       T07609                                  Symbol CDH23 Name (RefSeq) cadherin-23 isoform X1   KO K06813   cadherin 23 Organism opi  Ochotona princeps (American pika) Brite KEGG Orthology (KO) [BR:opi00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:opi03037]     101520572 (CDH23)    04515 Cell adhesion molecules [BR:opi04515]     101520572 (CDH23) Cilium and associated proteins [BR:opi03037]  Primary cilia and associated proteins   USH complex and associated proteins    101520572 (CDH23) Cell adhesion molecules [BR:opi04515]  Cadherins   Major cadherins    101520572 (CDH23) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Cadherin_3 Cadherin_2 Sde0182_C Motif Other DBs NCBI-GeneID:  101520572 NCBI-ProteinID:  XP_004583511 LinkDB All DBs Position 18:complement(37796459..38113331) Genome browser AA seq 3352 aa AA seqDB search MRGHISSVCCAVWLSVILPGCWGQMNRLPFFINHFFDTYLLISEDTPVGSSVTQLLARDM DNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNI QVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSQFFTI DSARGIVTVIRELDYETTQAYQLTVNATDQDKTRPLSTLANLAIIITDVQDMDPIFINLP YSTNIYEHSPPGTTVRIITAVDQDKGRPRGIGYTIVSGNTNSIFALDYISGALTLNGLLD RENPLYSHGFILTVKGTELNDDRTPSDATVTTTFNILVIDINDNAPEFNSSEYSVAITEL AQVGFALPLFIQVVDKDEGLNSMFEVYLVGNNSHHFIISPTSVQGKADIRIRVAIPLDYE TVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNVSLYENVTVGTSVLTV LATDNDVGTFGEVNYFFSDDPDRFSLDKDTGLIVLIARLDFELIQRFTLTIIARDGGGEE TTGRVRVNVLDVNDNVPTFQKDTYVGALRENEPSVTQLVRLRATDEDSPPNNQITYSIVN ASAFGSYFDISVYEGYGVISVNRPLDYEQIPNGLIYLTVMAKDAGNPPLNSTVPVIIEVF DENDNPPTFSKPAYFVSVVENIMAGATVLFLNATDLDRSREYGQESIIYSLEGSTQFRIN ARSGELTTTSLLDREAKSEYILIVRALDGGVGHNQKTGIATVNITLLDINDNHPTWKDTP YYINLVEMTPPDSDVTTVVAVDPDLGENGTLVYSIQPPNKFYSLNSTTGKIRTTHIMLDR ENPDPEEAELMRRIIISVTDCGRPPLRATSSATVFVNLLDLNDNDPTFQNLPFVAEVLEG TATGVSVYQVVAIDLDEGLNGLVSYRMQVGMPRLDFVIDSSSGVVMTTAELDRERIAEYQ LRVVASDAGTPTKSSTSTLTIRVLDVNDEMPTFFPAVYNVSVSEDVPREFRVVWLNCTDN DVGLNAELSYFITGGNVDGKFSVGYRDAVVRTVVGLDRETTAAYTLVLEAIDNGPVGKRH TGTATVFVTVLDVNDNRPIFLQSSYEASVPEDIVEGHSIVQLRATDADEGEFGRVWYRIL HGNHGNNFRIHVSSGLLMRGPRALDRETNSSHVLVVEAYNHDLGPMRSSVRVIVYVEDVN DEAPVFTQQQYSRLGLRETAGIGTSVTVVRATDRDTGAGGLVNYHILSGAEGKFEIDEST GLIVTVDYLDYETKTSYLMNVSATDQAPPFHRGFCTVYVTLLNELDEAVQFTNASYEAVI WENVALGTEIVRVQAFSIDNLNQIGYHFDAHTSAQAKALFKIDAVTGVITVKGLVDREKG DFYTLTVVADDGSPKMDSSVKVYITVLDENDNSPRFDVTSDSAVSVFEDCPVGQRVATVK ARDPDAGSNGQVVFSLASGNVGRAFEIITTNDSIGEVFVARPLDREELDHYILKVVASDR GTPPQKKDHILQVTILDVNDNPPVIESPSGYNVSVNENVGGGTAVVQVRATDRDIGINSI LSYYITEGNEDMTFRIDRLSGEIATRPAPPDRERQSFYHLVITVEDEGTPTLSATTHVYV TIVDENDNAPIFQQPHYEVSLDEGPDTINASLITVQARDPDEGPNGTVTYAIVAGNIINT FRINKHTGVIRAAKELDYEISHGRYTLTVTATDQCPILSHRLTSTTTVLINVNDINDNVP TFPRNYEGPFDVTEGQPGPRVWTFLAHDRDSGPNGQVEYSVVDGDPLGEFVISPVEGVLR VHKDVELDRETIAFYNLTICARDRGVPPLSSTMLVGIRVLDINDNDPVLLNLPMNVTISE NSPVSSFVAHVLASDADSGCNALLTFNITAGNRERAFLINTTTGIVTVNRPLDRERIPEY KLTVSVKDNPENPRIARRDFDVLMIFLADENDNHPLFTESTYQAEVMENSPAGTPLTVLN GPILALDADQDVYAVVTYRLLGAHSSLFDIDNSTGMVTVTSGVILDREAFSPPVLELLLL AEDIGLLNGTAYLFITILDDNDNWPTFSPAALTVHLLENCPPGLSVLQITATDEDSGLNG ELVYRIEAGAQDRFLIHPLTGVIRVGNATIDREEQDSYRLTVVATDRGTSPLSGTAVVTV LIDDINDSRPEFLNPIQTVSVLESAKPGTVIANVTAVDRDLNPKLEYHIISIVAKDDTDR LVPDQEDTFAVNVNTGSVMVKSPLNRELVATYEVTLSVIDNASDLPERSVSVPNAKLTVN ILDVNDNTPQFKPFGITYYTERILEGATPGTTLIAVAAVDPDKGLNGLITYTLLDLTPPG YVQLEDSSAGKVIANRTVDYEEVHWVNFTVRASDNGAPPRAAEIPVFLEVVDINDNNPIF DQPYYQEAIFEDVPVGTVILTVTATDADSGNFALIEYSLGDGEGKFAINPSTGDIYVLSS LDREKKDHYILTALAKDNPGDVASNRRENSVQVVIQVLDVNDCRPQFSKLQFSTSVYENE PAGTSVITMMATDQDEGSNGELAYSLEGPGAEAFHVDMDSGLVTTQRPLQSYERFNLTVV ATDGGQPPLWGTTMLLVEVIDVNDNRPVFVRPPNGTILHIREEIPLHSNVYEVYATDKDE GLNGAVRYSFLKTTGTRDWEYFTIDPISGLIQTAQRLDREKQAMYSLILVASDLGQPVPY ETMQPLQVALEDIDDNEPLFVRPPKGSPQYQLLTVPEHAPRGTLVGNVTGAVDADEGPNA IVYYFIAAGNEDKNFHLQPNGCLLVLQDLDREQEAIFSFIVKASSNHSWTPPRGPSLALD PVADLTLQEVRVVLEDINDQPPRFTKAEYTAGVATDAKVGSELIQVLALDADIGNNSLVF YSILAIHYFRALANDSEDVGQVFTLGHVDGILRTFDLFMAYSPGYFVVDIMARDLAGHND TAIIGIYILRDDQRVKIVINEIPDRVRSFEEEFIRLLSNITGAIVNTDDVQFHVDKKGRV NFAQTELLIHVVNRDTNRILDVDRVIQMIDENKEQLRNLFRNYNVLDVQPAISVRLPDDM SVLQMAIIVLAILLFLAAMLFILMNWYYRTVHKRKLKAIVAGSAGHRGFVDIMDMPNTNK YSFDGANPVWLDPFCRNLELAAQAEHEDDLPENLSEIADLWNSPTRTHGTFGREPTAVKP ADDRYLRAAIQEYDNIAKLGQIIREGPIQGSLLKVVLEDYLRLKKLFAQRMVQKASSCHS SMSELIQTELEEELGEQSPSQGSLRFRHKPPMELKGPDGIHVVHGSTGTLLATDLNSLPE DDQKGLGRSLETLMASEAAALERNARTESAKSTPLHKLRDVIMESPLEITEL NT seq 10059 nt NT seq  +upstreamnt  +downstreamnt atgaggggtcacatctccagtgtgtgctgtgcagtttggctttctgtaattctccctgga tgctggggccagatgaaccggctgcccttcttcatcaaccacttctttgacacgtatctg ctcatcagtgaggacacgcctgttggctcctctgtgactcagctgctggcccgggacatg gacaatgacccactggtgtttggtgtgtccggggaagaggcctcccgcttctttgccgtg gagcctgacactggcgtggtatggctccggcagccactggacagagagaccaagtccgag ttcacagtggagttctccgtcagtgaccaccaaggggtgatcacgcgcaaggtgaacatc caggttggggatgtgaacgacaacgctcccacgttccacaaccagccatacagtgtccgc atcccagagaacacgccggtggggacgcccatcttcatcgtgaatgccacagaccctgac ctgggtgcaggcggcagtgtcctctactccttccagcccccctcccagttcttcactatc gacagcgcccgtggcatcgtcactgtgatccgggagctggactatgagacgacgcaggcc taccagctcacggttaacgccacggaccaagacaagaccagacctctgtccaccctggcc aacttggccatcatcatcaccgatgtgcaagacatggaccccatctttatcaacctgccg tacagcaccaacatctacgagcactctcctccgggcacaacggtgcgcatcatcactgcc gtggaccaggacaaagggcgtccccgggggattggctacaccattgtgtcaggtaatacc aacagcatctttgccctggattacatcagtggagcactgactttgaatggcctgctggac cgggagaaccccctgtacagccacggcttcatcctgaccgtgaagggcacggagctgaat gatgaccgcaccccatctgatgccactgtcaccacgaccttcaatatcctggtcattgat atcaatgacaatgcacctgaattcaacagctctgagtatagtgtggccatcaccgagctg gcacaggtgggctttgccctcccactcttcatccaggtggtggacaaggatgagggcctg aacagcatgtttgaggtgtacctggtgggcaacaactcacaccatttcatcatctccccg acctccgtgcaaggaaaagccgacatccgcatccgtgtggctatcccgctggactatgag accgtggaccgctatgacttcgatctctttgccaacgagagtgtccctgaccatgtgggc tacgccaaggtgaagatcaccctcatcaatgagaatgacaaccgacctatcttcagccag cccctgtacaacgtcagcttgtatgagaatgtcaccgtgggcacctccgtgctgacagtg ctggccacagacaatgatgtgggcacctttggggaagtcaactacttcttcagtgatgac cctgacaggttctccctggacaaggacactgggctcatcgtactgattgccagactggac tttgagctcatccagcgcttcaccttgactatcattgctcgggatgggggaggggaggag accacaggccgggtcagggtcaatgtgctggatgtcaacgacaacgtgcccaccttccag aaggacacctacgtgggcgccttgagagagaatgagccttctgtcacacagctggtgcga ctccgggccacagatgaggactcacctcccaacaaccagatcacctacagcattgtcaac gcctccgcctttggcagctacttcgacatcagcgtgtatgagggctatggagtgatcagc gtgaaccgtcccctggattatgagcagatacctaatgggctcatctacctgacggtcatg gccaaggacgccggcaatccccctctcaatagtaccgtgccagtcattattgaggtgttt gatgagaacgacaaccctcccactttcagcaagcctgcctactttgtctctgtggtggag aacatcatggcaggagccacggtgctgttcctgaatgccactgacctggaccgttcccgc gagtatggccaggagtccatcatctactccttggagggctccacccagttccggatcaat gcccgctctggtgaactcaccaccacgtctctgctggaccgggaggccaagtctgaatac atccttattgtccgcgcactggacggaggtgtgggccacaaccagaaaaccggcattgcc accgtgaacatcaccctcctggacatcaatgacaaccaccccacctggaaggatacccca tactacatcaacttggtggagatgacacctccagactcagacgtgaccacggtggtggcc gtggacccagacctgggggagaatggcaccctggtgtacagcatccagccacccaacaag ttctacagcctcaacagcaccacgggcaagatccgcaccacgcatatcatgctggaccgt gagaaccccgaccccgaggaggcagagctcatgcgccggatcatcatctctgtcactgat tgtggcagaccccctctgagggccaccagcagtgccactgtgttcgtgaacctcctggac ctcaatgacaacgaccccacctttcagaacctgccctttgtggctgaggtcctggagggc accgctaccggcgtttctgtgtaccaggtggtggccatcgacctggacgagggcctgaat gggctggtgtcctaccgcatgcaggtgggcatgccccgcctagactttgtcatcgacagc agcagtggtgtggtgatgaccacagctgagttggatcgtgagcgcatcgccgagtaccag ctgcgggtggtggccagcgacgcgggcacgcccactaagagttccaccagcacactcacc atccgagtgctggatgtgaatgacgagatgcccaccttcttcccggccgtgtacaacgtg tcggtttcggaggacgtgccgcgcgagttccgcgtggtctggctgaactgcacggacaat gatgtgggcctcaacgccgagctcagctacttcatcacaggtggaaatgtggacgggaag ttcagcgtgggctaccgtgatgctgtcgtgaggacagtggtaggcctggaccgggagacc acggccgcatacacgctcgttctggaggccatcgacaacggtccagtaggcaagcggcac acaggcactgccaccgtgtttgtcactgtcctggacgtgaatgacaaccgacccatcttc ctgcagagcagctatgaggccagcgtgcccgaggacattgtggagggccacagcattgta cagctgagagccacagatgcagatgagggcgaattcgggcgcgtgtggtaccgcatcctg cacggtaaccatggcaacaacttccggatccatgtgagcagtgggctcctgatgcgaggg ccccgggccctggaccgggagacgaactcgtcgcacgtgctggtggtggaggcgtacaac catgacctgggccccatgaggagctctgtccgggtgattgtgtacgtggaagacgtcaat gatgaggccccggtgttcacgcagcaacagtacagccgcctggggcttcgtgagaccgcg ggcatcggcacttctgtcactgtcgtccgagcaacagaccgagacactggagctggtggc ctggtgaattaccacatcctgtcgggcgcagaaggcaagttcgagattgatgagagcacg gggctcatcgtcacagtggactatctggactacgagactaaaaccagctacctgatgaat gtatccgccaccgaccaggcgccccccttccaccggggcttctgcaccgtctatgtcact ttgctcaatgagctggatgaggctgtgcagttcaccaacgcctcctatgaggctgtcatc tgggagaacgtggccctgggcacggagatcgtgcgtgtgcaagccttctctatcgacaac ctcaaccagattggctaccactttgatgcgcacaccagtgcccaggccaaggccctcttc aagatcgatgctgtcacgggtgtgatcaccgtcaagggcctggtggaccgtgagaagggt gacttctacactttgacagtggtagcagatgacggtagccccaagatggactccagtgtg aaggtctacatcacagtgctagatgagaatgacaacagcccccgcttcgacgtcacctct gactcagctgtcagtgtgtttgaggactgtcccgtgggtcagcgtgtagccaccgtcaag gcccgggaccctgatgccggcagcaatgggcaggtggtcttttccctggcctcgggtaat gttggcagggcctttgagatcatcaccaccaatgactccattggcgaagtgtttgtggcc aggcccttggacagagaagagttggaccactacatcctcaaggttgtagcttctgaccgg ggcacccctccacagaagaaggaccacatcctgcaggtgaccatcctggatgtaaacgac aacccaccagtgatcgagagcccctccggctataatgtcagcgtgaatgagaacgtgggc gggggtactgccgtggtccaggtgagagccactgaccgtgacatcggtatcaacagcatc ctgtcttactacatcaccgagggcaacgaggacatgaccttccgcatagaccgcctcagc ggtgaaattgccacccggcccgcccctccagaccgtgaacgccaaagcttctaccacctg gtgatcactgtggaggatgagggcacccccaccctgtcggccaccacccatgtgtatgtg accatcgtggacgagaatgacaatgcacccatattccagcagccccattatgaggtgtcg ctggatgaaggcccagataccatcaatgccagcctcatcaccgtccaggcacgggaccca gatgagggccccaatggcaccgttacctacgccatcgtggctggcaacatcatcaacacc ttccgaatcaacaaacacacgggtgtcatccgtgctgccaaggagctggactatgagatc agccatggccgctacaccctgactgtcaccgccacggaccagtgccccatcctgtcacac cgcctcacctccactaccacggtgctcatcaacgtgaatgacatcaatgacaatgtgccc accttccctcggaactacgaaggaccgtttgatgtcaccgagggccaaccggggcccaga gtgtggaccttcctggcccacgaccgagattcgggtcccaacgggcaggtggagtacagc gtcgtggatggagaccccctgggggagtttgtgatctctcccgtggaaggggtgctgcgg gtacacaaggatgtggagctggaccgcgagaccattgccttctacaacctgaccatctgt gctcgtgacaggggcgtgcccccgctcagctccacgatgctggtggggatcagggtgctg gacatcaacgacaatgaccccgtgctcttgaacctgcccatgaatgttaccatcagcgag aacagccctgtctccagctttgtggctcatgtcttggccagtgacgccgacagcggctgc aatgcgttgctcaccttcaacatcacggcgggcaaccgcgagcgggccttcctcatcaat accacgacagggatcgtgacagtgaaccgacccctggaccgggagcggatccctgagtac aagttgactgtctctgtgaaggacaacccagagaacccgcgcatagccagaagggacttt gatgtgctgatgatattcctggcggatgagaatgacaaccaccccctcttcaccgagagc acctaccaggccgaggtgatggaaaactctcctgctgggacccccctcacggtgctcaat gggcccatcctggccctggacgcagaccaggacgtctatgctgtggtcacctaccggcta ctgggtgcccactccagcctttttgacattgacaacagcacaggtatggtgacagtgacg tcgggcgtcattctggaccgggaagccttctcgcctcctgtcctggagctactgttgctg gctgaggacatcgggctactcaatggcacggcctacctgttcatcaccatcctggatgac aatgacaactggcccaccttcagccctgctgccctcactgttcacctgctggagaactgc ccaccaggattatcagtccttcagatcacagccactgacgaggacagcggccttaacggg gaactggtgtaccgaatagaagctggagcccaagaccgcttcctcatccacccgctcacc ggcgtcatccgcgtcggcaatgccaccattgacagggaggagcaggactcttacaggctg actgtggtggccactgaccggggtaccagcccgctctcgggcacagctgtcgtcactgtg ctgattgatgacatcaatgactcccgccccgaattccttaaccccatccagacagtgagt gtgctggagtcggccaagccaggcacggtcattgccaatgtcactgccgttgaccgtgac ctcaacccaaagctggaataccacatcatcagcatcgtggccaaggatgacacagaccgc ctggtgcctgaccaggaggacacctttgccgtgaatgtcaacacaggctctgtcatggtg aaatcacccctgaaccgggagctagttgccacctatgaggtcactctctctgtgattgac aatgccagtgacctaccagaacgttctgtcagcgtgccaaatgccaagctgacggtcaat atcttggacgtgaacgacaacacacctcagttcaagccctttgggatcacctactacacg gagcggatcctggagggggccacccccggcaccacgctcattgccgtggcagctgtggac cctgacaagggcctcaacgggctcattacctacacgctgctggacctgacacccccaggc tacgtgcagctggaggactcctctgcggggaaggtcattgcaaaccgaacagtggactat gaggaggtacactgggtcaacttcactgtgagagcctctgacaatggggccccgccccgg gcggccgagatccctgtcttcctggaggtcgtggacatcaacgacaacaaccccatcttt gaccaaccctactaccaggaggccatctttgaggatgtgccagtaggcacagtcatcctg acagtcactgccactgacgccgactcgggcaactttgccctcatcgagtatagccttggg gatggagagggcaagtttgccatcaaccctagcacgggtgacatctacgtgctgtcatct ctggaccgggagaagaaggaccactatatcctgaccgccttggccaaagacaaccctggg gatgtggccagcaaccgtcgggaaaactcggtgcaggtggtgatccaagtgctggatgtc aacgactgccggccacagttctccaagctccagttcagcaccagcgtgtatgagaatgag ccagcaggcacctcggtcatcaccatgatggccactgaccaggatgagggctccaatgga gaactggcctactcacttgagggccccggtgcagaggccttccatgtggacatggactca ggcctggtgaccacacagcggccattgcaatcctacgagaggttcaacctgactgtggtg gccacggacggtggccagcctccgctctggggcaccaccatgctgctggtggaggtcatc gacgtcaacgacaaccggcccgtgtttgtgcgcccacccaatggcaccatcctccacatc cgagaggagatcccactgcactccaatgtgtatgaggtctacgccaccgacaaggatgag ggcctcaatggggcggtgcgctacagcttcctgaagactacgggcacccgggactgggag tacttcaccattgaccccatcagcggcctcatccagaccgcacagcgcctggaccgggaa aagcaggccatgtacagcctcatcctggtggccagtgacctgggccagccggtgccatac gagaccatgcagccactgcaggtggccctggaagacatcgatgacaacgaacccctcttc gtgaggcctccaaaaggcagcccccagtaccagctgctgacagtgcctgagcatgcacca cgtggcaccctggtgggtaatgtgacaggcgccgtggatgcagatgaaggccccaatgcc attgtctactacttcatcgcagctggcaatgaagacaagaacttccacctgcagcccaac ggatgcctgctggtgctgcaggatttggatcgggagcaggaggccatcttctccttcatt gtcaaggcctcaagcaaccacagctggacccctccccgtggtccctccctagcccttgac ccagtggccgacctcactctgcaggaggtgcgcgttgtgctggaggacatcaacgaccag ccgccacgcttcaccaaggccgagtacactgcaggggtggccactgacgccaaggtgggc tcggagctgattcaagtgctggccctggacgcagacatcggcaacaacagcctcgtcttc tatagcattctggccatccactacttccgggccctcgccaacgactctgaggacgtgggc caggttttcaccttggggcatgtggatggcatcctgcgcacattcgacctattcatggcc tacagccctggctactttgtggtggacatcatggcccgggaccttgcaggccacaatgac acggccatcatcggcatctacatcctgagggatgatcagcgtgtcaagattgtcattaac gagatcccagaccgtgtgcgcagctttgaggaagagttcatccgcctgctgtccaacatc acgggagcaatcgtcaacactgatgatgtgcagttccacgtggacaagaagggacgggtg aactttgcacagacggagctgctcatccacgtggtgaaccgtgacaccaatcgcatcctg gatgtggaccgggtgatccaaatgatcgatgagaacaaggaacaactgcgcaacctcttc cggaactacaacgtgctggacgtgcagcctgccatctccgtgcggctacccgatgacatg tctgtcctgcagatggcgatcatcgtcctggccatcctcctcttcctggcagccatgctc ttcatcctcatgaactggtactacaggaccgtacacaagaggaagctcaaggccattgtg gctggctcagcagggcatcgtggcttcgtggacatcatggacatgcccaacaccaacaag tattcctttgacggagccaaccccgtgtggctggaccccttctgccggaacctggagctg gccgcccaggctgagcacgaagatgacctccccgagaacctgagtgagatcgctgacctg tggaacagccctacccgcacccatggaaccttcgggcgagaaccaacggccgtcaagcct gctgatgaccggtacttgcgggcagccatccaggagtacgacaacattgccaagctgggc cagatcatccgggaggggcccatccagggctcgctgctgaaggtggtcctggaggattac ctgcgtctcaaaaagctctttgcacagcggatggtgcaaaaagcctcctcctgccactcc tccatgtccgagctgatccagacggagctggaggaggagctcggggagcagagccccagc cagggcagcctgcgcttccgccacaagccgcccatggagctcaaggggccggacgggatc cacgtggtccacggcagcaccggcacgctgctggccaccgacctcaacagcctgcccgaa gacgaccagaagggcctgggccgctcgctggagacgctcatggcctcggaggccgctgcc ttggaacgcaacgcccgcaccgagtctgccaagtccacacccctgcacaagctgcgtgac gtcatcatggagagccccctggagatcacagagctctga

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