Ochotona princeps (American pika): 101520952
Help
Entry
101520952 CDS
T07609
Symbol
ERCC2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03022
Basal transcription factors
opi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101520952 (ERCC2)
09124 Replication and repair
03420 Nucleotide excision repair
101520952 (ERCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opi03021
]
101520952 (ERCC2)
03400 DNA repair and recombination proteins [BR:
opi03400
]
101520952 (ERCC2)
Enzymes [BR:
opi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101520952 (ERCC2)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101520952 (ERCC2)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101520952 (ERCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
AAA_22
DEAD
SesA
nSTAND3
Motif
Other DBs
NCBI-GeneID:
101520952
NCBI-ProteinID:
XP_004598000
LinkDB
All DBs
Position
5:4598147..4608130
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ
RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLTFYEKQEGEKLPFLGLALSSRKNLCIHPE
VTPLRFGKDVDGKCHSLTASYVRAQYQQDTSLPHCRFYEEFDTHGRQVPLPAGIYNLDDL
KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID
NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKQTDEQRLRDEYRRLVEGLREASIARE
TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEFVKWRLRVQHVVQESPPAFLSS
LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP
FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT
FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT
SYQYMESTVASWYEQGILENIQRNKLLFIETQDSAETSVALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF
LRQMAQPFHREDQLGLSLLSLEQLQSEETLRRIEQIAQQL
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacgtggacgggctgctggtctacttcccgtatgactacatctacccggag
cagttctcgtacatgctggagctcaagcgcacgctggacgccaagggtcatggggtcctg
gagatgccctcaggcaccgggaagactgtgtcactactggccttgatcatggcataccag
cgggcgtatccgctggaggtgaccaagctcatctactgctcccggacggtgcctgagatt
gaaaaggtgatcgaggaactgcgcaagctgctcaccttctatgagaagcaggagggcgag
aagctgccattcctgggcctggccctgagctcccgcaagaacctgtgcatccatcccgag
gtgacgcccctgcgcttcggaaaggacgtggatgggaagtgccacagtctcacggcctcc
tacgtgcgggcacagtaccagcaggacaccagcctgccccactgccgcttctatgaggaa
tttgatacccatgggcgccaggtgcccctccctgctggcatctataacctagacgacctg
aaggccctgggccagcgccaaggctggtgcccgtacttcctcgctcggtactcgatcctg
cacgccaatgtggtggtctacagctaccactatctcctggaccccaagatcgccgacctg
gtctccaaggagctggcccgcaaggctgtggtggtctttgatgaggctcacaacatcgac
aacgtctgtatcgactccatgagcgtcaacctcacacgccgcaccctggaccgctgccag
gccaacctggagaccctgcagaagaccgtgctcaggatcaagcagacggatgagcagcgc
ctgcgggatgagtaccggcgcctagtggaggggctgcgggaggccagcatagcccgcgag
acggatgcccacctggccaaccccgtgttgcccgacgaggtgctacaggaggcagtgccc
ggctccatccgcacagccgagcacttcctgggcttcctgaggaggctgctggagttcgtc
aagtggcgcctgcgcgtgcagcacgtggtgcaggagagcccgcccgccttcctgagcagc
ctggcgcagcgcgtgtgcatccagcgcaagccgctcaggttctgcgccgagcgcctgcgt
tccctgctgcacaccctggagatcgccgacctggcggacttttcccccctcaccctcctc
gccaacttcgccacccttgtcagcacctacgccaagggcttcaccatcatcatcgagccc
tttgacgacaggaccccgaccatcgccaaccccatcctgcacttcagctgcatggatgcc
tcactggccatcaagcctgtgttcgagcgcttccagtcggttatcatcacctctgggacc
ctgtccccgctagacatctaccccaagatcctggactttcaccccgtcaccatggcaacc
ttcaccatgacactggcccgggtctgcctatgccctatgatcatcggccgtggcaacgac
caggtggctatcagctccaagtttgagacccgggaagacatcgccgtgatccggaactac
gggaacctgctgctggagatgtcagccgtggtgcccgacggcatcgtggccttcttcacc
agctaccagtacatggagagcaccgtggcctcctggtacgagcagggaatccttgaaaac
attcagcggaacaagctgcttttcatcgagacgcaggacagcgccgagaccagcgtggcc
ctggagaagtaccaggaggcctgtgagaacggccgcggtgccatcctgctgtccgtggcg
cggggcaaggtgtctgagggaatcgactttgtgcaccacttcggtcgggccgtcatcatg
ttcggcgtcccctacgtctacacacagagccgcatacttaaggcgcggctcgagtacctg
cgggaccagttccagatcagggagaacgacttcctcacctttgacgccatgcgccacgcc
gcccagtgcgtgggtcgcgccatcaggggcaagaccgactacggcctcatggtctttgcc
gacaagcggtttgcacgtgccgacaaacggggaaagctgccccgctggatccaggagcac
ctgacggacgccaacctcaacctgaccgtggacgagggcgtccaggtggccaagtacttc
ctgcggcagatggcgcagcccttccaccgggaggaccagctgggcttgtccctgctcagc
ctagagcagctgcagtcggaggagacgctgcggcggattgagcagattgcccagcagctg
tga
DBGET
integrated database retrieval system
