Oryza sativa japonica (Japanese rice) (RefSeq): 4328617
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Entry
4328617 CDS
T01015
Name
(RefSeq) exopolygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa00040
Pentose and glucuronate interconversions
osa01100
Metabolic pathways
Module
osa_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
4328617
Enzymes [BR:
osa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
4328617
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Beta_helix
Pectate_lyase_3
Pectate_lyase_4
RHS_N
Motif
Other DBs
NCBI-GeneID:
4328617
NCBI-ProteinID:
XP_015624346
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Position
2:5411301..5414197
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AA seq
418 aa
AA seq
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MVSSTRRTTSSLSATTAAAIAAAAAALMVSVAFATAQGAAGAAPSVPAGPLDIAQLGAKG
DGTSDSTAFVLQAWKNACNATGTQKIVIPPGNYLTGALNLKGPCTSSIILRLDGNLLGTG
DLNAYKTNWIEVEHVDNFAINGHGIIDGQGPLVWTHNQCNKNYNCKILPNSLVIDYSTNV
TVRGITLKNSKFFHLNIYESKNVVIDKVTITSPGDSPNTDGIHVGDSTNITISSTTIAAG
DDCISIGPGTKMVRVNGVRCGPGHGISVGSLGRYKDEKDVEDIIVTNCTIKGTTNGLRIK
SYEDSKSQLRATKFLYDGITMDNVSYPIIIDQKYCPNNICSASGTSKVAVTDIVFKNIVG
TSATPEAVTLNCANNLPCQGIQLHNVDLKYAGQGNTTLSVCKNVAGKSSNVAKELACV
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggtttcctccacgagaaggacgacctcgtctctatccgccaccaccgccgccgccatc
gcggcggcggcggcggcgctgatggtgtccgtggcgttcgccacagcgcagggggcggcg
ggggcggcgccgtcggtgccggcggggccgctggacatcgcgcagctgggggcgaagggc
gacgggacgagcgacagcacggcgttcgtgctgcaggcgtggaagaacgcgtgcaacgcg
acggggacgcagaagatcgtgatcccgccggggaactacctcaccggcgcgctcaacctc
aaggggccgtgcaccagcagcatcatcctccgcctcgacggcaacctcctcggcaccggc
gacctcaacgcctacaagaccaactggatcgaggtggagcacgtcgacaacttcgccatc
aacggccacggcatcatcgacggccagggccccctcgtctggacccacaaccagtgcaac
aagaactacaactgcaagatcctccccaatagcttggtgatcgactactcgacgaacgtg
acagtgagggggataacgctgaagaacagcaagttcttccacctcaacatatacgagagc
aagaacgtggtgatcgacaaggtgaccatcacgtcgccgggggacagcccaaacacggac
ggcatccacgtcggcgactccaccaacatcaccatcagctccaccaccatcgccgccggc
gacgactgcatctccatcggccccggcaccaagatggtccgcgtcaacggcgtccgctgt
ggccccggtcacggcatctccgtcggcagcctcggccggtacaaggacgagaaggacgtg
gaggacatcatcgtcaccaactgcacgataaagggcaccacgaacggcctccggatcaag
tcgtacgaggactccaagtcgcagctgagggcgaccaagttcctgtacgacggcatcacc
atggacaacgtgagctacccgatcatcatcgaccagaagtactgccccaacaacatctgc
tccgcgtccggcacgtccaaggtcgccgtcaccgacatcgtcttcaagaacatcgtcggc
acgtcggcgacgcccgaggccgtcacgctcaactgcgccaacaacctgccgtgccagggc
atccagctgcacaacgtcgacctcaagtacgccggccaagggaacaccaccctctccgtc
tgcaagaacgtcgccggcaagtccagcaacgtcgccaaggagctcgcctgcgtctga
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