KEGG   Oryza sativa japonica (Japanese rice)

Genome infoPathway mapBrite hierarchyModule Genome browser
Search genes:

Genome information

T numberT01015
Org_codeosa
NameOryza sativa ssp. japonica cultivar Nipponbare (Japanese rice)
CategoryReference genome
Annotationyes
TaxonomyTAX: 39947
    LineageEukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
BriteKEGG organisms [BR:br08601]
KEGG organisms in the NCBI taxonomy [BR:br08610]
KEGG organisms in taxonomic ranks [BR:br08611]
KEGG organisms: plants [BR:br08613]
Data sourceRefSeq (Assembly: GCF_034140825.1 Complete Genome)
BioProject: 1123306
KeywordsPhotosynthesis
Chromosome1
    SequenceRS: NC_089035
    Length43929697
Chromosome2
    SequenceRS: NC_089036
    Length36447916
Chromosome3
    SequenceRS: NC_089037
    Length37399924
Chromosome4
    SequenceRS: NC_089038
    Length36078568
Chromosome5
    SequenceRS: NC_089039
    Length30400764
Chromosome6
    SequenceRS: NC_089040
    Length32122276
Chromosome7
    SequenceRS: NC_089041
    Length29936421
Chromosome8
    SequenceRS: NC_089042
    Length28605474
Chromosome9
    SequenceRS: NC_089043
    Length27474823
Chromosome10
    SequenceRS: NC_089044
    Length23931887
Chromosome11
    SequenceRS: NC_089045
    Length31111469
Chromosome12
    SequenceRS: NC_089046
    Length28271460
ChromosomeMT
    SequenceRS: NC_011033
    Length490520
ChromosomePltd; Circular
    SequenceRS: NC_001320
    Length134525
PlasmidB1; Circular
    SequenceRS: NC_001751
    Length2135
StatisticsNumber of nucleotides: 386337859
Number of protein genes: 29429
Number of RNA genes: 3149
Created2003
ReferencePMID: 37553831
    AuthorsShang L, He W, Wang T, Yang Y, Xu Q, Zhao X, Yang L, Zhang H, Li X, Lv Y, et al.
    TitleA complete assembly of the rice Nipponbare reference genome.
    JournalMol Plant 16:1232-1236 (2023)
DOI: 10.1016/j.molp.2023.08.003
ReferencePMID: 16100779
    AuthorsInternational Rice Genome Sequencing Project.
    TitleThe map-based sequence of the rice genome.
    JournalNature 436:793-800 (2005)
DOI: 10.1038/nature03895
ReferencePMID: 12447438 (chromosome 1)
    AuthorsSasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, et al.
    TitleThe genome sequence and structure of rice chromosome 1.
    JournalNature 420:312-316 (2002)
DOI: 10.1038/nature01184
ReferencePMID: 16109971 (chromosome 3)
    AuthorsBuell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, et al.
    TitleSequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.
    JournalGenome Res 15:1284-91 (2005)
DOI: 10.1101/gr.3869505
ReferencePMID: 12447439 (chromosome 4)
    AuthorsFeng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, et al.
    TitleSequence and analysis of rice chromosome 4.
    JournalNature 420:316-320 (2002)
DOI: 10.1038/nature01183
ReferencePMID: 12791992 (chromosome 10)
    AuthorsRice Chromosome 10 Sequencing Consortium.
    TitleIn-depth view of structure, activity, and evolution of rice chromosome 10.
    JournalScience 300:1566-9 (2003)
DOI: 10.1126/science.1083523
ReferencePMID: 16188032 (chromosomes 11 and 12)
    AuthorsRice Chromosomes 11 and 12 Sequencing Consortia.
    TitleThe sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    JournalBMC Biol 3:20 (2005)
DOI: 10.1186/1741-7007-3-20