KEGG   Oryza sativa japonica (Japanese rice) (RefSeq)

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Genome information

T numberT01015
NameOryza sativa ssp. japonica cultivar Nipponbare (Japanese rice)
CategoryReference genome
TaxonomyTAX: 39947
    LineageEukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
BriteKEGG organisms [BR:br08601]
KEGG organisms in the NCBI taxonomy [BR:br08610]
KEGG organisms in taxonomic ranks [BR:br08611]
KEGG organisms: plants [BR:br08613]
Data sourceRefSeq (Assembly: GCF_001433935.1 Chromosome)
BioProject: 122
Original DBRAP-DB
StatisticsNumber of protein genes: 28073
Number of RNA genes: 71
ReferencePMID: 16100779
    AuthorsInternational Rice Genome Sequencing Project.
    TitleThe map-based sequence of the rice genome.
    JournalNature 436:793-800 (2005)
DOI: 10.1038/nature03895
ReferencePMID: 12447438 (chromosome 1)
    AuthorsSasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, et al.
    TitleThe genome sequence and structure of rice chromosome 1.
    JournalNature 420:312-316 (2002)
DOI: 10.1038/nature01184
ReferencePMID: 16109971 (chromosome 3)
    AuthorsBuell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, et al.
    TitleSequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.
    JournalGenome Res 15:1284-91 (2005)
DOI: 10.1101/gr.3869505
ReferencePMID: 12447439 (chromosome 4)
    AuthorsFeng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, et al.
    TitleSequence and analysis of rice chromosome 4.
    JournalNature 420:316-320 (2002)
DOI: 10.1038/nature01183
ReferencePMID: 12791992 (chromosome 10)
    AuthorsRice Chromosome 10 Sequencing Consortium.
    TitleIn-depth view of structure, activity, and evolution of rice chromosome 10.
    JournalScience 300:1566-9 (2003)
DOI: 10.1126/science.1083523
ReferencePMID: 16188032 (chromosomes 11 and 12)
    AuthorsRice Chromosomes 11 and 12 Sequencing Consortia.
    TitleThe sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    JournalBMC Biol 3:20 (2005)
DOI: 10.1186/1741-7007-3-20