KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 9272713
Entry
9272713           CDS       T01015                                 
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9272713
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    9272713
   03036 Chromosome and associated proteins [BR:osa03036]
    9272713
Spliceosome [BR:osa03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    9272713
 Complex B
    9272713
 Complex C
   U2 SnRNP specific factors
    9272713
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    9272713
SSDB
Motif
Pfam: SF3b1 HEAT HEAT_EZ HEAT_2 Htt_N-HEAT_1 XMAP215_CLASP_TOG Vac14_Fab1_bd
Other DBs
NCBI-GeneID: 9272713
NCBI-ProteinID: XP_015624286
LinkDB
Position
2:16449677..16455152
AA seq 1005 aa
MADADGTPAPSVAWDSSSTPTPKKQRSRWDETPAGVGSTAPRATDAVTPAGYAPGPTPFD
AADLATPSPGQIARGPMTPEQYQLLRWERDIEGRNMPLTDEELDTMLPQVGYKILDPPAS
YQPIRTPARKLLATPTPLFTPLYAIPEENRGQQFDVPKELPGGLPQMKPEDYQYFGTLLN
EGEEEEKLSPEEHKERKILKLLFKVKNGTPQQRKAALRQLTDKAQEFGAGPLFNKILPLL
MQPTLEDQERHLLVKVIDRVIYKLDDLVRPFVHKILVVVEPLLIDEDYYARVEARQIISN
LSKAAGLATMIATMRPDIDNTDEYVRNTTARAFSVVASGLGIPALLPFLKAVCQSKKSWQ
ARHTGIKIVQQIAILMGCAVLPHLRSLVDIIEHGLSDENQKVRTITALSLAALAEAAAPY
GIESFDTVLRPLWKGTKSHRGKVLAAFLKAVGFIIPLMDVEYASYYTRGVIPILIREFQS
PDEEMKKIVLKVVKQCVSTEGVEADYIRNGILPEFFRHFWIRRMALDRRNYKQLVETTVE
IANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVAHLGASDIDRHQEELLIDGIVYT
FQQQTSDDSNVILNGFETVANALGQRVKPYVPQICGIIKWMLNTSSAKARQRAADLMSRI
AIVMKLCQEERLMCHLGHILYESLGEEYPDVLGSILGALKAIVNVVGMTKMTPPIKDLLP
RLTPILKNRHEKVQENCIDLVGRVADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATA
NTFGYIAKAIGPEDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV
PEFNVRNGILKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALG
VAGLGCEDALVHXNLVWPNIFETSPHVINAVMEAIDGMRVALGSAVILNYCLQGLFHPAR
KVREVYWKTYNSLYIGAQDALVAAYPALDIDGNNIYSRPELAMFV
NT seq 3018 nt   +upstreamnt  +downstreamnt
atggctgatgcggatggaacccctgcaccgtccgtggcgtgggattcttcttccacccca
acgcccaagaagcagagatcaaggtgggatgagacgcctgcgggtgtggggagcacggca
cctcgcgctaccgatgctgttactcctgcaggttatgctcctgggccaaccccgttcgac
gcggcggacctcgccacgccgtcacctggccagattgctcgtggcccgatgacaccggag
cagtaccagctcttgcggtgggagcgggacatcgaggggcgtaacatgcctctgactgat
gaggaacttgacaccatgctcccgcaggtggggtacaagattcttgatcctccggcttct
tatcagcccatacgcacacccgcaaggaagcttctcgcgacgccgacaccgctgtttaca
ccgctctatgccatccctgaggagaaccgtgggcagcagtttgatgtgcccaaggagttg
cctggtgggttgccacaaatgaagccggaggattaccagtactttggaacattgctgaac
gagggagaggaagaggagaagctgtcaccagaggagcataaggagaggaagatcttgaaa
ctcctgttcaaggtgaagaatggcacaccacaacagcggaaagcggcgcttcgacagctc
acggacaaggcgcaggaatttggtgctggcccgctgttcaacaagatcctgccgttgctc
atgcagccaacgcttgaggaccaggagcgtcatcttctggtgaaggtcattgatagagtg
atatacaagctggatgatctggttcgtccgtttgtgcataagattcttgtggttgttgag
ccacttctgattgatgaggattactatgctcgtgttgaggcccggcagattatctcaaat
cttagcaaagcagctggacttgctactatgattgccaccatgagaccagatattgataac
actgatgagtatgtgaggaataccactgctagggcattcagtgtggttgcttctggtttg
gggattcctgctctcttgccattcttgaaggctgtctgccagagtaaaaagtcttggcag
gctcggcacactggtattaagattgttcagcagattgctattctcatgggctgtgctgtt
ctgccacacctcaggtccttagttgatatcattgagcatggtctgagtgatgaaaaccag
aaagtacggacaatcaccgcactgtctcttgctgcacttgctgaggctgccgcaccctat
ggtatagaaagttttgatacggtgttgaggcctttgtggaagggtaccaaatctcaccgt
ggaaaggtccttgctgctttcttgaaagccgttggtttcatcatccctcttatggatgtt
gaatatgccagttactacaccaggggggtgattccaatcctgattagggagttccagtca
ccagatgaagagatgaaaaagattgtcctgaaggttgttaaacaatgtgtcagtacagag
ggtgtagaggctgactatatccgtaatggcatccttccagagttcttccgtcacttttgg
ataaggagaatggctctagatcgtaggaactataaacaacttgtggaaacaacagtggag
attgcaaacaaggttggagttgctgacatcgttgggaggattgttgaggatctcaaagat
gaaagtgaaccttacaggagaatggtgatggaaacaattgagaaggtggtggctcacctg
ggtgcctcagatattgatcgccatcaggaggagcttcttattgatggcatcgtgtatact
ttccaacagcagacaagtgatgattcaaatgtcatacttaatgggtttgaaacagttgcg
aatgcacttggccagagggttaagccttatgttcctcagatttgtggtatcatcaagtgg
atgctgaacacctcgagtgcaaaagctaggcagcgagctgctgatctgatgtcaaggata
gccattgtgatgaagctgtgccaagaggagcggctgatgtgtcacttgggtcatatatta
tatgagtccttgggggaggagtatcctgatgtgctgggttcaatccttggagctttaaag
gctatcgtgaatgttgttggtatgacaaagatgacgccaccaatcaaagatcttcttcct
cggttgaccccaatcttaaagaataggcatgaaaaggtccaagagaactgtattgattta
gttggtagggttgctgatcgtggagcagagtttgtgccagccagggaatggatgaggatt
tgcttcgagctgcttgaaatgttgaaggctcacaagaagggtattagacgagccactgcg
aacacatttggctatattgcgaaggctattgggccagaggatgtgttggccactctattg
aacaacttgaaggtgcaggagcgtcagaaccgagtttgcactactgtcgcaatcgccatt
gttgctgaaacttgctccccctttacagttttgcctgcccttatgaacgagtaccgagta
ccagagttcaatgtccgtaatggtattttgaagtctctgtcatttctttttgaatacatt
ggtgagatgggtaaagattacatatatgctgtcacgccattgcttgaagatgctctgatg
gatagagatctggttcatcggcagactgctgcctctgctgttaagcacatggcactaggt
gttgctggcttgggttgtgaggatgctcttgtccacnttaaccttgtctggcccaacata
tttgagacatctccccatgtcataaatgctgtcatggaggcgattgatggcatgagggtt
gccctaggctcagctgtgattttgaattattgcctccaaggcctttttcatccagcaagg
aaagtgcgtgaagtatactggaagacctacaactctctatatattggcgcacaagatgca
cttgttgctgcttatcctgcgttggacattgatgggaacaatatctacagccgcccagag
ttagctatgtttgtgtga

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