Oncorhynchus tshawytscha (Chinook salmon): 112237454
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Entry
112237454 CDS
T05605
Symbol
ggps1
Name
(RefSeq) geranylgeranyl pyrophosphate synthase
KO
K00804
geranylgeranyl diphosphate synthase, type III [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw00900
Terpenoid backbone biosynthesis
otw01100
Metabolic pathways
Module
otw_M00367
C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
112237454 (ggps1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
otw01006
]
112237454 (ggps1)
Enzymes [BR:
otw01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
112237454 (ggps1)
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
112237454 (ggps1)
2.5.1.29 geranylgeranyl diphosphate synthase
112237454 (ggps1)
Prenyltransferases [BR:
otw01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
112237454 (ggps1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
GCSF
Motif
Other DBs
NCBI-GeneID:
112237454
NCBI-ProteinID:
XP_042161627
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All DBs
Position
LG24:32677242..32708149
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AA seq
309 aa
AA seq
DB search
MDGDMDPTGPERILLEPYKYLLQLPGKQVRTKLSQAFNHWLNVPEDKLQVIIQVTEMLHN
ASLLIDDIEDSSTLRRGFPVAHSIYGVPSVINSANYVYFLGLEKVLTLDHPEAVHVFTRQ
LLELHRGQGLDIHWRDTYTCPTESQYRTMVLQKTGGLFGLAVGLMQLFSGWKRDLKPLLD
TLGLFFQIRDDYANLNSTEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRT
ENVDIKRYCVDYLEKAGSFAYTRETLRGLEVEAYRLITDLGGNPELEGLVKHLSKMFREP
ETKSGPEED
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggatggagacatggatccaacagggcccgagaggattctgctggaaccctataagtac
ctgctacagctgccaggaaaacaagtacggactaaactctctcaggcgtttaaccactgg
ctcaatgttcccgaggacaaacttcaggtgatcatacaagtgacagagatgctgcacaac
gccagtctcctgatcgatgacattgaggacagttctacactgaggagaggtttccctgtc
gcccacagcatctatggagtcccctctgttatcaactctgccaactacgtctacttcctg
ggactggagaaggtgctaaccctggatcaccccgaggcagtgcatgtgttcaccagacag
ctgttggagctgcatcgcggccagggcctagacatccactggagggacacctacacctgt
cccacagagagccagtaccgtaccatggtcctccagaagacggggggtctgtttggcctg
gccgtggggctcatgcagctgttctctggctggaaacgagaccttaagcctctcctggat
acgttaggactcttcttccagatcagagacgactacgccaacctgaactcaacagagtac
agtgagaacaagtccttctgtgaggatctgaccgagggtaagttctccttccccaccatc
catgccatctggtcccgtccagagagcactcaggttcagaacatcctgagacagaggacg
gagaacgtggacattaagaggtactgtgtggactacctggagaaggcgggctccttcgcc
tacaccagagagaccctgagagggctggaggtcgaggcataccgccttatcactgatctg
gggggaaaccctgagctggaggggttagtgaaacacctcagtaagatgtttagggagcct
gagacaaaatctggccctgaagaggactga
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