Psychrobacter cryohalolentis: Pcryo_0351
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Entry
Pcryo_0351 CDS
T00350
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcr
Psychrobacter cryohalolentis
Pathway
pcr03030
DNA replication
pcr03410
Base excision repair
pcr03420
Nucleotide excision repair
pcr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pcryo_0351
03410 Base excision repair
Pcryo_0351
03420 Nucleotide excision repair
Pcryo_0351
03430 Mismatch repair
Pcryo_0351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcr03032
]
Pcryo_0351
03400 DNA repair and recombination proteins [BR:
pcr03400
]
Pcryo_0351
Enzymes [BR:
pcr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pcryo_0351
DNA replication proteins [BR:
pcr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pcryo_0351
DNA repair and recombination proteins [BR:
pcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pcryo_0351
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pcryo_0351
MMR (mismatch excision repair)
DNA ligase
Pcryo_0351
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pcryo_0351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
ABE74135
UniProt:
Q1QDW8
LinkDB
All DBs
Position
427681..429756
Genome browser
AA seq
691 aa
AA seq
DB search
MTDPIAPLTSKDINTAKSAANEDAIVAQMRTFIDALKKHNYAYYVLDNPILEDSEYDQLR
RSLLELEEEYPDLIQPDSPINQVGDMPLSAFTQVTHDIPMLSLGNVFEYDDLRDFMRRVN
DRLSVAQQSPEYEMELKLDGLAVSLKYAYGKFVQAVTRGDGQTGEDITQNAKTIRNLPLW
IPAASDIELLEVRGEVLMPKAGFERLNRLAEEKGDKTFANPRNAAAGSLRQLDPAIAASR
PLAFYCYSVNQGLPEHIKTQSAALAWLKTIGFTVSAVEVVQNPREAQAYYESVKETRGDL
PFEIDGMVIKVNSLALQQQLGFLSREPRWATAYKFPAETVMTRLHAIEWQVGRTGAITPV
GKLEPVKVGGVTVSNVTLHNFGEIQRLDVRAGDMVSVHRAGDVIPKVTRVWTDQRPENSE
PVKLPSTCPVCDSPVVLPKDEALARCTGGLFCPAQQVEALIHFVSRRAMDIDGLGASWLI
SFFEHGLVKTVADIYQLHNHQEELITLEKLGEKSVQNILSAIEASKQTTLARFIYALGIR
GVGETTAQNLAQQFGDLDALMSASIEKLLLTPDVGAITAELTYKFFRAPHNIEVINALRE
AGVHWDKVEQVASEGLPLDGQTWVITGALDSMARDEAKAKLQALGAKVSGSISAKTTALL
AGDKAGSKMAKAEKLGVKVVGEEEFLVLVGE
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccctatcgcaccgcttacctctaaagacatcaatactgcaaaatctgcagca
aacgaagatgctatcgtggctcaaatgcgcacgtttattgatgcccttaagaagcacaat
tatgcctattatgtgctcgacaatcccatcttagaagacagcgaatacgatcagttgcgt
cgctctttattggagcttgaagaagaatatcccgatttaatacagccggatagcccaatc
aatcaagttggcgatatgccgctatcggcatttacgcaagtcacccatgatattccgatg
ctgtcgcttggcaacgtctttgaatacgatgatttgcgtgattttatgcgccgcgttaat
gaccgcttaagcgtggctcagcaaagccctgaatacgagatggagctaaagctagatggc
ttggcggtatcgctcaaatatgcttatggcaagtttgtccaagcggtgacacgcggtgat
ggacaaacgggcgaggatattacccaaaatgccaaaactatccgtaacttgccgctatgg
attcctgctgcaagcgatattgagctattagaagtacgcggtgaagtgctgatgccgaaa
gcgggctttgagcgtttgaaccgccttgctgaagaaaagggcgacaaaacttttgccaat
ccacgcaatgctgccgctggaagtttaagacaacttgatcccgccattgccgctagccgt
ccgctcgcgttttattgctattctgtcaatcaagggttacctgagcatatcaaaacccaa
tcagcagcgcttgcttggctaaaaaccattggctttaccgtcagtgcagttgaggtagta
caaaatccacgcgaggctcaagcctattatgaatcggtaaaggagacacgtggcgatctg
ccgttcgagattgatggtatggtcatcaaggtcaatagcttggcgttgcagcaacagctt
ggttttttatcgcgtgagccgcgctgggcaaccgcttataaattccctgccgaaaccgtc
atgacacgcttgcatgctatcgagtggcaagtcggacgcactggcgcgattactccagtc
ggtaaattagaacccgtgaaagtcggtggcgtcacggtcagcaatgtcacgctgcataac
tttggtgagattcagcgattggatgtgcgtgcaggcgatatggtcagcgtccatcgtgca
ggggatgtgatacctaaagtcacccgcgtttggacagatcagcgtccagaaaactctgaa
cccgttaagttgccatcgacttgcccagtatgcgactcgccagtggtgctgcccaaagat
gaagcattggcgcgttgcaccggtgggctattttgtcccgcgcagcaggtcgaggcgctc
attcactttgtctcgcgtcgggcgatggatatcgatggcttaggcgcaagttggctgatt
agcttttttgagcacggtttggtcaagaccgttgccgatatctatcagttgcacaatcat
caagaggagctgattacgcttgagaaactgggcgaaaaatctgttcaaaatatcctcagc
gctatcgaagccagtaagcagacgacgctcgcacgctttatctatgcgctgggtattcgc
ggtgtcggtgagacgacggcgcaaaacctcgctcaacaatttggcgatcttgatgcctta
atgtctgccagtatcgaaaaactgctactcacgccagatgtgggtgctattaccgctgaa
cttacttataaattctttcgcgcaccgcataatatcgaagtcatcaatgcattacgcgag
gcaggcgtgcattgggataaggttgagcaggtcgcgtcagaaggattgccgctcgatggt
caaacatgggtgattactggcgcgcttgatagcatggcacgcgatgaagccaaagccaaa
ctgcaagcgcttggtgccaaagtatctggtagcatctctgcaaaaaccacggcgttactg
gcaggtgataaggctggctcaaaaatggcaaaagctgaaaaactgggcgttaaagtagtg
ggtgaagaagagtttttggtgttggttggggagtag
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