Plectropomus leopardus (leopard coralgrouper): 121944340
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Entry
121944340 CDS
T07454
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121944340 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plep03000
]
121944340 (kdm2ba)
04121 Ubiquitin system [BR:
plep04121
]
121944340 (kdm2ba)
03036 Chromosome and associated proteins [BR:
plep03036
]
121944340 (kdm2ba)
Enzymes [BR:
plep01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
121944340 (kdm2ba)
Transcription factors [BR:
plep03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
121944340 (kdm2ba)
Ubiquitin system [BR:
plep04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
121944340 (kdm2ba)
Chromosome and associated proteins [BR:
plep03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
121944340 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
121944340 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
LRR_4
PHD
Motif
Other DBs
NCBI-GeneID:
121944340
NCBI-ProteinID:
XP_042344029
LinkDB
All DBs
Position
6:11859539..11870758
Genome browser
AA seq
780 aa
AA seq
DB search
MALSLSGDDEEYDSESEQQRAANRPKPKVGTSSAVKLPSNRSSSGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEEDK
FNFMLMECSICNEIVHPNCLKVSDASGVVNDELPNCWECPKCNHAGKSGKVLKQKRGPGF
KYASNLPGSLLREQKPVKEEGDVSSAAKRRPDREETPRYRPEESLHRQPPLLSPSNLTRP
RLEDKLRKKRKLFDDDEEEDLSVRKKEKSDDPYFSKILHQIKTEEEDDDAYEEEDEEIRE
PHFRGSVERKGRFGDVEEDEEEKDSKNALLNPFIKTPVGDSDQSHCSSPQAGPSSEGGSE
TQEKGPRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPETENEEPK
RLFRNGSELGDQRPHLKTKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPVPPHSPPKCV
QMERHVIRPPPISPPPDRLPLKDGKTHVIQREVWMKIFGYLSHQELCVCMRVCKTWNRWC
CDKRLWTTIDLSRCTSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRVLKL
SGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVE
DLRLAGLDITDTSLRLISRQMPSLSTLDLSYCNHINDQSVNLLTAAGTTTRDSLTEINLS
VCNRVTDHSLNFFKRCGSICQIDLRFCKQVTKTACERFIAEMSVSVPFRLKEDKLLQKTS
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcattgagcggagacgatgaggaatatgattcagagtctgagcagcagcgt
gcggccaaccggccaaaacccaaagtggggacgtcgtcggctgttaagctgccgtccaac
cgcagctcgtccggagccagacgcaggaggacacgatgccgaaaatgcgaagcgtgcctc
cggacagagtgtggagagtgtcacttctgcaaagacatgaagaagtttggagggccgggg
cgcatgaagcagtcttgtattatgagacagtgcattgcgccggttctgcctcacacggcg
gtgtgtgtggtgtgtaaagaggcgggtaaagaggacacactggaggaagaagaggataag
ttcaacttcatgctcatggagtgctctatctgcaacgagatcgtccaccccaactgtctc
aaggtgagcgatgcctcaggagtggtgaacgatgaactccctaactgctgggaatgtccc
aaatgcaaccacgctgggaaaagtgggaaagtattgaagcaaaaaaggggtccagggttc
aagtacgcctccaacctccctggctctctgctgagggaacagaagcctgtgaaggaggag
ggggacgtttcttctgcagccaagaggagaccagacagagaggagacacccaggtacaga
cccgaggagtctctgcaccgacagccaccactgctctccccaagcaatctgacccggccc
aggcttgaggacaaactgaggaagaagaggaagctgtttgatgatgacgaagaggaggat
ctcagcgtgaggaagaaggaaaagtcagacgatccttatttttccaaaattctgcaccaa
atcaagacagaagaggaggacgatgacgcatatgaggaggaggatgaagaaataagggaa
cctcactttcggggcagcgtagaaaggaaagggcgttttggagacgttgaagaagacgag
gaagagaaagactccaagaatgcacttttgaatcccttcattaaaactccggtcggagac
agcgaccagtcgcactgcagctctccgcaagctggccccagcagcgagggcggaagtgag
actcaggaaaaggggccgcgtccaaaagctcgccgcaagcgacgtttacctaacagagag
ctgagccgagagctgagcaaagcactgaaccaggaaatacagaagacggaagactgcctt
gccaacgagaaccgccaacccctcaaggtagagccggagacagaaaacgaggaacccaag
aggttgttccgcaacggcagtgaactcggggatcagaggcctcacctcaagaccaaagag
atgaacgggaccccctgggagctgcgccacttctacccgagtcagatcactccgctgggc
ttcaacaggagcacgccgaccaaccggccggtgcccccacactccccgcccaagtgtgtc
caaatggagcggcacgtcattcggccccctccaataagcccgccgcccgacagactgcct
ctgaaagatggtaaaacacacgtcatacagcgagaggtctggatgaagatctttggctat
ctctcacaccaggagttgtgtgtctgcatgagagtttgcaagacgtggaacagatggtgt
tgtgataagagactgtggacaacgattgatctgagccgctgcacctccatcactcctctc
atgctaagtgggattatccgccgacagccagtgtccttggacctcagttggacaaacatt
tccaagaaacaattaagctggctcattaacagattgccaggtctgcgagtgttaaagttg
tcggggtgttcgtgggctgctgtttctgcactctgcacctccagctgccctctgctgcgc
accttggatgtccagtgggtagaaggactcaaagacgcacagatgagggaccttctctca
ccgcccactgacaacagaccaggtcaactggataatcgctgcaagttgcgaaatgtagag
gacctgcggttggcagggcttgacatcaccgacacatccttgcgtctcatcagtcgacag
atgccgtctctgtccacgctggatctgagctactgcaaccacatcaacgaccagtcagtc
aacctgctgacggcagcagggaccacgaccagagactccctcacagagatcaacctgtca
gtttgtaaccgggtcacagaccattccctaaactttttcaagcgctgtggaagcatatgt
cagatcgaccttcgcttctgcaagcaggtgaccaagacggcgtgcgagaggttcatcgca
gagatgtctgtgagcgtaccgtttcgactcaaagaggacaaactgctgcagaagacgagc
tag
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