Parus major (Great Tit): 107207637
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Entry
107207637 CDS
T04864
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107207637 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmaj03041
]
107207637 (SF3B1)
03036 Chromosome and associated proteins [BR:
pmaj03036
]
107207637 (SF3B1)
Spliceosome [BR:
pmaj03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107207637 (SF3B1)
Complex B
107207637 (SF3B1)
Complex C
U2 SnRNP specific factors
107207637 (SF3B1)
Chromosome and associated proteins [BR:
pmaj03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
107207637 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
HEAT_EZ
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
TALPID3
Motif
Other DBs
NCBI-GeneID:
107207637
NCBI-ProteinID:
XP_015490608
Ensembl:
ENSPMJG00000003918
LinkDB
All DBs
Position
7:complement(9737049..9760198)
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggcagtgacagcagatttgctggatatgtcacttctattgcagca
actgaattggaagatgatgatgatgactacccttccacaagtttgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccacagtctactgaacagtat
gatccttttgcagagcaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctc
aaagtcgtcaatggagccgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgccacacctaaaaaattgtccagctgggatcaagcagag
actcctggacacaccccatctctgcgatgggatgaaactccaggccgtgcaaagggtagc
gaaactccaggtgccaccccaggctcaaaaatctgggatccaactcccagtcacacacca
gcaggagctgcaacacccggccgggacacacctggtcacgcaacaccgggccatggaggt
gccacttccagtgcacggaaaaatcgatgggatgaaacccccaaaacagaaagagatact
ccgggccatggcagtggctgggctgagacacctcgtacagatagaggtggtgactccatt
ggtgagacaccaaccccaggagcgagcaaaaggaagtcacgctgggatgaaacacctgcc
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccatcggtacccca
gctatgaacatggcaacccctaccccaggtcacatcatgagcatgactcctgaacagctg
caggcttggcgctgggagagggaaattgatgaaagaaacagaccactttctgatgaagaa
ttggatgctatgtttcctgaaggatataaggttctcccacccccagctggttacgtgccc
attcgtactcctgctcggaagctcacagcgactccaacacctctggggggtatgacagga
ttccacatgcagacagaggaccgcactatgaagagtgttaatgaccagccatctggcaac
ctgccattcctgaaaccagatgatatccagtactttgacaagctgctggttgatgttgat
gaatcgactctgagtccagaggaacagaaggaaagaaaaataatgaaattgcttctgaaa
ataaagaatggcacacctcccatgcgaaaggctgcgttgcggcaaattacagataaagct
cgggaatttggagcagggccgctgttcaatcagattctgcctctgctgatgtcaccaaca
ctcgaagatcaggagcgtcacttgcttgtcaaagtcattgacagaattctttacaaattg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgagccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttccaacttggctaaggct
gcgggtttggcaacaatgatctccacaatgcgacctgatattgataacatggatgaatat
gtcagaaatacaacagctcgagcctttgccgttgttgcatctgctctgggcattccttct
ctgttgcccttcctaaaagctgtctgtaaaagtaaaaaatcctggcaggccaggcacact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcctgcctcatctc
aggagcctggttgaaattattgagcatgggctggtggatgagcagcagaaagttcgcacc
atcagtgctttggccattgctgctttggctgaggcggccactccctatggtattgagtca
tttgattctgtcctgaagcccttgtggaagggtattcgtcagcacagaggaaagggtttg
gctgcatttttgaaggctattggttacctgattccactcatggatgctgagtatgcaaac
tactacactagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttgaaggtggtaaagcaatgttgtggtacagacggtgttgaagca
aattacattaaaacagaaatcttgccacccttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacaactgtggagctggcaaataaa
gttggagcagcagaaattatttctaggattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggtcatggaaacaattgagaagataatgggaaatctgggggcagcagac
atcgatcataaactggaagagcagctcattgatggtattttgtacgcctttcaggaacag
acaacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaa
agagtgaaaccctacttgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcggccaaagtcaggcagcaggccgctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtacctgggt
gaagaatatccggaagtactgggcagcatactcggagcgcttaaggcaattgtgaatgtt
ataggtatgcataagatgacgccaccaatcaaggaccttctgccacggctaacacctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttgggcgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattattaaaagctcacaagaaagctatcagaagagccacagtaaacacttttggttat
attgcaaaagctattggacctcacgatgtattggccacactgctaaacaacttgaaagta
caggaaagacagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactaaatgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatcttgta
cacagacaaacagccagtgctgtggtgcagcacatgtcccttggtgtttatgggttcggc
tgtgaagattctcttaatcacttgttaaattacgtgtggcccaatgtgtttgaaacctct
cctcacgtcatccaggcagttatgggggctctggagggcctcagagttgctattgggccc
tgcaggatgttacagtattgtttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctataattcaatctacatcggatcacaggatgctctgatagcacat
tatccaagaatctataatgatgagaagaacacctatattcgttacgaacttgattacatc
ttataa
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