Pediococcus pentosaceus SL4: T256_07930
Help
Entry
T256_07930 CDS
T02906
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppen
Pediococcus pentosaceus SL4
Pathway
ppen03030
DNA replication
ppen03410
Base excision repair
ppen03420
Nucleotide excision repair
ppen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
T256_07930
03410 Base excision repair
T256_07930
03420 Nucleotide excision repair
T256_07930
03430 Mismatch repair
T256_07930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppen03032
]
T256_07930
03400 DNA repair and recombination proteins [BR:
ppen03400
]
T256_07930
Enzymes [BR:
ppen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
T256_07930
DNA replication proteins [BR:
ppen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
T256_07930
DNA repair and recombination proteins [BR:
ppen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
T256_07930
NER (nucleotide excision repair)
GGR (global genome repair) factors
T256_07930
MMR (mismatch excision repair)
DNA ligase
T256_07930
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
T256_07930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
zf-tcix
zf-NADH-PPase
HRI1
Motif
Other DBs
NCBI-ProteinID:
AHA05654
LinkDB
All DBs
Position
complement(1544003..1546030)
Genome browser
AA seq
675 aa
AA seq
DB search
MSLPKKLEEMQVEEASKLAQNLRETLDRWSKLYYTKDAPEVEDYEYDEKYADLVALEEAF
PEIITQDSITQRVGGEILEGFTKVTHTEPMLSMGDVFSRDELVEFNNRIQKNVGHPVDYN
VELKIDGLAISLIYRDGELIQGSTRGDGNVGEDITKNLKTIKSVPKKLTRPLSIEVRGEC
FMPKASFAKLNAQQLEDGKPVFANPRNAAAGSLRQLNTNVTKKRDLDTFIYTVVDSNQLG
AKTQHQAIQMMAELGFNTNPTQEVCANLDEVWDYIAKYEGQREDLPYGIDGIVLKVNDLS
LQQELGHTVKIPRWEIAYKFPPEEAATVVRDIEWTVGRTGVVTPTAVMDPVQLAGTTVSR
ATLNNVDQLTAKDVHIGDTVLLHKAGDIIPEITRVVLEKRPAGISELDIPTHCPSCGKEL
VHLNGEVALRCINPDCPAQIVARLEHFGSRNAMNIMGLGPKQIQQLYAKNFIHHFDDLYK
LTSEELSQLDGFKEKRVNNLLEAIDNSRKNSLERLINGLGIQGVGTKMARTLAEKFGTMD
NLMQTTIEEFDAVDTIGETLANNLATFFQSDVAQNMIDELKAVGVNMEYLGVKPAESPDG
YYKGKKVVLTGKLEQYTRNELKERLISLGADVAGSVSKKTDILIAGADAGSKLTKAQALG
IEILDETEAIAKFEQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaccaaaaaaattggaagagatgcaggttgaagaagctagtaaattagcgcaa
aaccttagagagactttggatcgttggagcaaattatattacaccaaagatgctcctgaa
gttgaagattacgaatatgacgaaaaatatgcggatttagtggcgttagaagaagctttt
ccagaaatcatcacccaagattcgatcactcaacgagttggtggtgaaattttagaaggc
tttaccaaagttacccatacagaaccgatgttgtcgatgggggatgttttttcgcgcgat
gaattagttgaatttaataatcgtatccaaaaaaatgttgggcatccagttgattataat
gttgaattaaaaattgacggattggcaatttcattaatttatcgagatggtgagctaatt
cagggctctacccgtggagatggaaatgttggtgaagatattactaagaacttgaagact
attaagtcagttcctaaaaaattaactcgtccgctttcgattgaagttcgaggagaatgc
tttatgcctaaagcttcatttgctaaattgaatgcacaacaattagaggatgggaaacca
gtttttgctaatccacgtaatgcggcagcaggaagtttacgacaattaaatacaaatgta
actaagaagcgggatttagacacatttatttatacagtggtggattcaaatcaattaggg
gccaaaactcaacaccaagcaattcaaatgatggctgaattaggctttaacactaaccct
actcaagaagtatgtgctaatttagatgaagtttgggattatattgctaaatacgaaggt
caacgggaagatttaccttatggaatcgacgggatcgttttgaaagttaatgatttaagc
cttcagcaagaattgggacacacagttaaaattccgagatgggaaatcgcctacaaattt
ccaccagaagaggcagctacagtagttcgagatattgaatggacggtaggacgaacaggc
gtggtaacccccacagcggtgatggaccccgttcaattggctggaacaacagttagccgg
gccactttgaataatgtagaccaattaacagctaaagatgttcatattggcgatacggta
ctgttacataaagctggtgatatcattccagaaattacacgagtagtgttagaaaagcgt
ccagcaggaattagtgagttagatattccaacccactgtccatcatgtggtaaggaatta
gttcacttaaatggcgaagtggcccttcgttgcattaaccctgattgtccagctcaaatt
gtagctcgtttagagcattttggatcacgaaatgcgatgaatattatggggcttggacca
aaacaaattcaacaattatacgcgaagaattttattcatcactttgacgatttatacaaa
ttaacttcagaggaattaagccaattagatggttttaaagagaaacgtgttaacaactta
cttgaagccattgataatagccgaaaaaattctttagagcgtttaattaatgggctaggg
attcagggggttggtacgaaaatggcgcgtactttagcggaaaaattcggaacgatggat
aatttgatgcaaacaacaattgaagaatttgatgctgtagatacgattggagaaacctta
gctaataatttagcaacattcttccaaagtgatgtagcccaaaatatgattgatgaattg
aaggctgtcggagttaatatggaatatttgggtgtaaagccagctgaaagtcctgatggt
tattacaaagggaaaaaagttgttttgactggaaaattagaacagtatacacgaaatgaa
ttaaaggagcgtttaattagtttaggtgcagatgtggcgggttcagtttcgaagaaaact
gatatcctcattgcaggagccgatgctggtagtaaattaactaaggcacaagctttagga
atcgaaattttagatgaaaccgaagctattgctaaatttgaacaataa
DBGET
integrated database retrieval system
