Pseudomonas putida ND6: YSA_04033
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Entry
YSA_04033 CDS
T02170
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03030
DNA replication
ppi03410
Base excision repair
ppi03420
Nucleotide excision repair
ppi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YSA_04033
03410 Base excision repair
YSA_04033
03420 Nucleotide excision repair
YSA_04033
03430 Mismatch repair
YSA_04033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppi03032
]
YSA_04033
03400 DNA repair and recombination proteins [BR:
ppi03400
]
YSA_04033
Enzymes [BR:
ppi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YSA_04033
DNA replication proteins [BR:
ppi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YSA_04033
DNA repair and recombination proteins [BR:
ppi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YSA_04033
NER (nucleotide excision repair)
GGR (global genome repair) factors
YSA_04033
MMR (mismatch excision repair)
DNA ligase
YSA_04033
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YSA_04033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
RNA_ligase
DUF3701
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AFK68949
UniProt:
I3UTX8
LinkDB
All DBs
Position
2172475..2173890
Genome browser
AA seq
471 aa
AA seq
DB search
MPHTGVDKLADRQAVARWMAGKSGVWVQPKVDGVAVSLTYQQGRLVQLTSRGDGVNGHDW
SRHIPQLDAVTRQLPEALDLHLQGELYLRLSDHVQAKAGSANARGTVAGLLARKQLTGAQ
GNAIGLFVWGWPHGPEQQTERLAQLAQLGFPDSQLYSIAIDTLEDAAHWREHWYRSALPF
ATDGVILRQSSRPPAERWQAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHLL
PVTLDDRRITQVSLGSLARWHTLDIRPGDQVAISLAGLTIPRLEQVVHRTVERQAVAAPA
PDRYHAHSCWQASEGCDEQFIARLTWLGGKQGLALPRTGPGTWRRLVEAGLVTSMTDWLQ
LDAERLQQAPGISRLTAAHLLGSFDEARSRPFDQWLRALGVPIGKHLPLTGDWQALASRS
AGQWQTVPGIGAKRSRQLVEFFAASEVQAIAAQLAETGIEGFRPPPQRIEQ
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
gtgccgcataccggcgtcgacaagctggcagaccgccaggccgtggcgcgatggatggcc
ggcaagagcggcgtgtgggtacagcccaaggtcgacggcgtagccgtttccctcacctac
caacagggccgattggtgcagctgaccagccggggggacggcgtaaacggccatgactgg
agccgacacatcccgcaactcgacgctgtcactcggcagttgcctgaggcgctcgacctg
cacttgcaaggtgagctgtatctgcgcctgagcgatcatgtgcaagccaaggcaggcagc
gccaacgcccggggtaccgtggccgggctgctcgcacgcaagcaactgactggcgcacaa
ggcaacgctatcggcctgttcgtgtggggctggccgcacggccccgagcaacagaccgaa
cgccttgcccaactggcacaactgggttttccggacagccagctttacagcatcgccatc
gacacgctggaggatgcagcacactggcgcgagcactggtatcgctctgctctgcccttc
gccaccgacggtgtaatcctgcgccagagcagtcggccacctgccgagcgctggcaggcc
aaggcgccctactggatcgcggcctggaagtatccctatgcacaagccttggccgaagta
cgcgacgtgcgctttcgggttggccgcaccggcagggtcacgcccgtgttgcacttgctg
ccggtcaccctggacgaccgacggattacccaggtaagcctgggttcgctggcgcgctgg
cacaccctcgacatccgccccggcgaccaggtggccatcagcctggccgggctgaccatt
ccacgcctggagcaagtggtgcatcgcacggtcgaacgccaggcggtcgccgcgcctgcg
cccgaccgctatcatgcccacagctgctggcaagccagcgagggctgtgatgagcaattc
attgcccgcctcacctggcttggcggtaaacagggcctggccttgccccgcaccgggccc
ggcacatggcgtcggctggtcgaagcgggcttggtaacgtccatgaccgattggctgcag
ctcgatgccgagcgcctgcagcaggcccccggcatcagcagactcaccgcggcacacctg
ctgggcagtttcgacgaagcccgctcacgccccttcgatcaatggctgcgcgcccttggc
gtgcccattggcaagcatttgccactaactggcgactggcaggcgctggcttcacgcagc
gccgggcaatggcaaactgtgcccggcatcggcgcaaaacgctcgcgccaacttgtggaa
tttttcgcggcctctgaggtgcaagccatcgccgcacagttggccgaaaccggcatagaa
ggtttccggcccccaccccagcgcattgagcaatga
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