Paroceanicella profunda: FDP22_15480
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Entry
FDP22_15480 CDS
T06319
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
ppru
Paroceanicella profunda
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppru03021
]
FDP22_15480 (rpoH)
Transcription machinery [BR:
ppru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FDP22_15480 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_19
UCR_14kD
HTH_11
Motif
Other DBs
NCBI-ProteinID:
QDL93061
UniProt:
A0A5B8FHZ5
LinkDB
All DBs
Position
complement(3485667..3486566)
Genome browser
AA seq
299 aa
AA seq
DB search
MSTYTSLPAPSPEQGLSRYLSEIRKFPMLEPDQEYMLAKAWVDHEDKESAHKLVTSHLRL
AAKIAMGYRGYGLPTAEVVSEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRS
WSLVKMGTTASQKKLFFNLRKAKNRIGALEEGDLRPEHVEKIAHDLGVTENDVVSMNRRL
SGGDASLNAPLKTDGEGSAEWQDWLADDDADQATAYAEQDELDSRRSLLMDAMQALNERE
RHILTERKLRDEPVTLEELSGVYNVSRERIRQIEVRAFEKLQKKMRELAADKGMIPQFG
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacatatacttcgctcccggccccctcgccggagcaggggctcagccgttacctc
agcgaaatccgcaagttccccatgctggaaccggatcaggaatacatgctggccaaggct
tgggtcgaccacgaggacaaggagtccgcccacaagctggtgacgtcgcacctgcggctc
gcggccaagatcgccatgggctatcgcggctacgggctgccgacggccgaggtggtgtcg
gaggccaacgtggggctgatgcaggcggtcaagcgcttcgaccctgagaagggcttccgc
ctcgcgacctacgcgatgtggtggatccgcgcctcgatccaggaatacatcctgcggtcc
tggtcgctggtgaagatggggacgacggcgtcgcagaagaaactcttcttcaacctgcgc
aaggcgaagaaccgcatcggcgcgctggaggaaggcgatcttcgccccgagcatgtcgag
aagatcgcccatgacctgggtgtgacggaaaatgacgtggtgtcgatgaaccggcgcctg
agcggtggcgacgcctcgctgaacgcgccgctgaagaccgacggcgaaggctccgcggag
tggcaggactggctggcggatgacgatgcggaccaggccaccgcatatgcggagcaggac
gagctcgacagccgccgcagcctgctcatggatgcgatgcaggcgctcaacgagcgcgag
cgccacatcctgaccgagcgcaagctgcgcgacgagccggtgacgctggaggagctttcg
ggcgtctacaacgtctcgcgcgagcgcattcgccagatcgaggtgcgcgccttcgagaag
cttcagaagaagatgcgcgagctggccgccgacaagggcatgatcccgcagttcggctga
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