Roseomonas fluvialis: Rmf_01200
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Entry
Rmf_01200 CDS
T08992
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
rfl
Roseomonas fluvialis
Pathway
rfl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rmf_01200 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfl03400
]
Rmf_01200 (nth)
Enzymes [BR:
rfl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Rmf_01200 (nth)
DNA repair and recombination proteins [BR:
rfl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rmf_01200 (nth)
Prokaryotic type
Rmf_01200 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
RecR_HhH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BDG70191
LinkDB
All DBs
Position
complement(122196..122912)
Genome browser
AA seq
238 aa
AA seq
DB search
MPARPAKPKRIDHGSATAPRRARMMPAAQAEAFIRSLAVANPAPETELLYTDPFTLLVAV
VLSAQTTDAAVNRCTPALFAAAPTPAAMAALGAEGIGPYIRTIGLWQGKARNVAALARDL
VDKHGGQVPADRAALEALPGVGRKTANVVLNVVFGQETMAVDTHIFRLGNRCGLAPGRNV
REVEERLVKRCPPALLRDAHHWLILHGRYVCKARAPECWRCVARAFCNYRDKVLAPPA
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcacgccccgcgaaaccgaagcgtatcgaccacggcagcgcgaccgcgccgcgc
cgcgcgcgcatgatgcccgcggcacaggcggaggccttcatccggtccctggctgtcgcc
aatccggcgccggaaaccgagcttctgtacaccgaccccttcacgctgcttgtggccgtg
gtgctctcggcccagacgaccgacgcggcggtgaaccgctgcacgcccgccctgttcgcg
gcggcgcctacgccggccgccatggccgcgctgggggcggagggcatcggcccctacatc
cgcaccataggcctgtggcagggcaaggcgcgcaacgtggccgccctggcacgcgacctg
gtggacaagcatggcgggcaggtgccggccgaccgcgcggcgctggaagcgctgcccggg
gtggggcgcaagaccgccaacgtggtgctgaacgtggtgttcgggcaggagacgatggcg
gtcgacacgcacatcttccgcctgggcaaccggtgcggcctggcgccgggccgcaacgtg
cgcgaagtcgaggaacgcctggtcaagcgctgcccgccggcgctgctgcgcgatgcgcat
cactggctgatcctgcacgggcgctacgtgtgcaaggcgcgcgcaccggaatgctggcgc
tgcgtggcgcgcgccttctgcaactatcgcgacaaggtgctggcgccgccggcatga
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