Rathayibacter rathayi: C1O28_01230
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Entry
C1O28_01230 CDS
T05845
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
rry
Rathayibacter rathayi
Pathway
rry00300
Lysine biosynthesis
rry00550
Peptidoglycan biosynthesis
rry01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rry00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
C1O28_01230
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
C1O28_01230
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rry01011
]
C1O28_01230
Enzymes [BR:
rry01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
C1O28_01230
Peptidoglycan biosynthesis and degradation proteins [BR:
rry01011
]
Precursor biosynthesis
Amino acid ligase
C1O28_01230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
DUF4267
DUF6257
Motif
Other DBs
NCBI-ProteinID:
AZZ47985
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All DBs
Position
complement(247159..248703)
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AA seq
514 aa
AA seq
DB search
MLRPHISPSVPLATLAQTLELGGEDDLTTEISGVTLIASDVEPGDLFVALPGVNRHGAEF
VEQAASRGAAAVLTDTTGAASARATGLPVLVVDQPRSRLGAIASTVYGTAERSPVLLGVT
GTNGKTSTVHMLEGILRQLGVVPGLSSTAERHIGDTSVTSGLTTPEATELHALVARMEEE
GVGAAAIEVSAQALTRRRVDGVVFDVAGFTNLSHDHLDDYGDMDTYFGEKARLFRPDRAR
RAVVSLDSPAGARLCEIAGVPVTTITSVPGVDADWIVSMLEQEFGRTRFRLQNREGRAIT
TSVPIIGVHMAANAGLALVMLIEAGWPIGEIRAALHRDGGVDASLPGRTERVSGERGPTV
YVDFGHSADAFARTLEAVREVTPGRVIMVFGADGDRDALKRPAMAEVAVRGSDALVITDH
HPRFEDPASIRRTLVDAARAARPDAELHEVDDPKRAIRVAVSLAHEGDAILWAGPGHQNY
RDILGVRTPYSARAEARAALREAGWADEAVPATA
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgctccgcccccacatctcgccgtccgttcctctcgccacactcgcacagaccctcgag
ctcgggggcgaggacgatctcaccaccgaaatcagcggagtcacgctgatcgcctcggac
gtcgagcccggcgacctcttcgtcgcgctacccggcgtgaaccgccacggcgccgagttc
gtcgagcaggccgcgtcacgcggggccgcagccgtgctcaccgacaccaccggagcagcc
tccgcgcgggcgactgggctgcccgtcctcgtggtcgaccagccgcgctcgcgcctgggt
gcgatcgcctccaccgtctatggcacggccgaacgctccccggtgcttttgggcgtgacc
ggcaccaacggtaagacctcgacggtgcacatgctcgaggggatcctccgacagctcggc
gtggtcccgggcctgagttcgaccgccgagcgccatatcggcgacacctcggtgaccagc
ggtctgaccacgccggaggccaccgagctgcacgccctggtcgcccgtatggaggaggag
ggtgtcggcgccgccgcaatcgaagtcagcgcgcaggccctcacccggcgccgcgtcgac
ggcgtcgtcttcgacgtcgcggggttcaccaatctgagccatgaccacctcgacgactac
ggcgacatggacacctacttcggcgagaaggcgcggctcttccgacccgaccgggcccgc
cgtgccgtcgtctcactcgactcgcccgccggggctcgcctctgcgagatcgccggcgtg
ccagtcaccacgatcacctccgttcccggcgtcgacgccgactggatcgtcagtatgctc
gagcaggaattcggccgcacccggttccggctccagaaccgcgagggccgcgcgattacg
acctccgtcccgatcatcggtgtgcacatggcggccaacgccggcctcgctcttgtgatg
ctgatcgaggccggctggccgatcggcgagatccgagccgccctgcaccgcgacggcgga
gtggacgcctcgctgcccggccgcaccgagcgcgtctcgggtgagcgcgggccgacggtg
tatgtcgacttcggccacagcgccgacgccttcgcgcgcacgctcgaggcggtccgagag
gtcactccgggtcgggtgatcatggtcttcggcgcggacggcgaccgcgatgcgctgaag
cgtcccgcgatggccgaggtcgcggtccggggcagcgacgcgctggtgatcaccgatcac
cacccgcgctttgaggacccggcctcgatccgtcgaaccctcgtcgacgccgcccgcgct
gcacgtcccgatgccgagctccacgaggtcgacgaccccaaacgcgctatccgcgtcgcc
gtctcgctggcgcacgagggcgacgccatcctctgggccggtcccggacaccagaactac
cgcgacatcctcggtgtccgcaccccctattccgctcgagcggaggcgcgcgctgcgttg
cgcgaggccggctgggcggacgaggcggtcccggccaccgcgtga
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