Runella slithyformis: Runsl_5296
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Entry
Runsl_5296 CDS
T01553
Definition
(GenBank) methionine synthase
KO
K00548
5-methyltetrahydrofolate--homocysteine methyltransferase [EC:
2.1.1.13
]
Organism
rsi
Runella slithyformis
Pathway
rsi00270
Cysteine and methionine metabolism
rsi00450
Selenocompound metabolism
rsi00670
One carbon pool by folate
rsi01100
Metabolic pathways
rsi01110
Biosynthesis of secondary metabolites
rsi01230
Biosynthesis of amino acids
Module
rsi_M00017
Methionine biosynthesis, apartate => homoserine => methionine
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09100 Metabolism
09105 Amino acid metabolism
00270 Cysteine and methionine metabolism
Runsl_5296
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
Runsl_5296
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
Runsl_5296
Enzymes [BR:
rsi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.13 methionine synthase
Runsl_5296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Met_synt_B12
S-methyl_trans
Pterin_bind
B12-binding_2
B12-binding
Urocanase_C
Motif
Other DBs
NCBI-ProteinID:
AEI51593
LinkDB
All DBs
Position
complement(6157104..6161006)
Genome map
AA seq
1300 aa
AA seq
DB search
MQNPNIQEILKSRILVLDGAMGSMIQRYTLADADYRGERFKDFPHELKGNNDLLSLTRPD
VIREIHEAYLEAGADIIETNTFSGTTIAMADYHMEDLVYELNYESARLAREACDKYAALN
PDKPRFVAGSIGPTNRTASLSPDVNDPGFRAVTFDELVDAYYEQVQALTDGGADVMLVET
IFDTLNAKAALYAIDLYFDDVKKGTVRPIRGAFRPASVNTTKIQLPIMVSGTITDASGRT
LSGQTTEAFLTSVSHMPLLSIGLNCALGADLMRPYVQTLATQAPFYTSAHPNAGLPNEMG
EYDQTPEQMAVIIDDFLQNGFINIIGGCCGTTPPHIKAIAEVAAKYEPRDIPENDHVQKL
SGLEPLKITKETNFVNIGERCNVTGSKKFARLIREGNYDAAIAVAREQVDTGAQVIDINM
DEGMIDGVQAMTKFCNLLMAEPDIARVPFMVDSSKWEVIEAGLKCLQGKAIVNSISLKEG
EEKFIQQAEKVRRYGASVVVMAFDEVGQADNYERRLEICERAYWILVNKVGFPPQDIIFD
PNILTVGTGMEEHNNYAVDFINATRWIKEHLPYAKVSGGVSNVSFSFRGNEPVREAIHTV
FLYHAIKAGMDMGIVNAGQLGVYDDLPKDMLEHCEDLILNRRPDATERMLAFAETVKSKG
KEQVIDTAWRDQPVAKRLEHALIKGLTEYIDQDVEEARQTVDKPLHVIEGPLMDGMNVVG
DLFGEGKMFLPQVVKSARVMKKAVAYLLPFIEEEKNASPSTTESGGSKILLATVKGDVHD
IGKNIVGVVLACNNYEIIDLGVMVPTDKILAAAKEHNVDIIGLSGLITPSLDEMVGVAKE
MERQGFKVPLLIGGATTSRIHTAVKIDPHYSGPVIHVLDASRAVPVAGKLTQNEQTYAEA
LADIKKEYAKLREDHAKRQQAKEAVTIEAARANKTKIDWETFTPVKPAFLGNRYFYDYPL
EEIAKYIDWTPFFQTWQLHGKYPKIFDDAVVGNEAKKLYNDAKAMLAEIIQNKSLKANAV
IGFYPANSVGDDIVLHDFEEVEVRFAGQGQKKRTEYRVVLSSGASEVGTSQKTETDFQSA
QTVLHHLRQQNQKAANLPNLCLSDYIMPLSGDKPEAINDGITNPAEPLRTDYIGAFAVTA
GIGIEALLEKYEADHDDYNSIMVKAVADRLAEAFTELMHERVRKEYWGYVKDEALSNEEL
ISEKYQGIRPAPGYPACPEHTEKRTLFDLLDAEAQIGIQLTESFAMYPASSVSGWYFAHP
DSRYFALGKIAKDQVQDYAARKGMTLEEAEKWLSPVLNYD
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacccaaacatccaggaaatcctcaaatcccgtatcctcgtgctcgacggtgcg
atgggctcgatgatccaacgttatacattagccgacgccgattaccggggcgaacgtttt
aaagacttcccgcacgagctcaaaggcaacaatgacctgctgtcgttgacacgccctgac
gtgattcgggaaatccacgaagcctacctcgaagccggtgcggacatcatcgaaaccaac
accttcagcggtaccaccatcgccatggccgactaccacatggaggatctggtctacgaa
ctcaattacgaatcggcgcggctggcgcgggaagcctgcgataaatatgccgccctgaat
cccgacaaaccccgttttgtggcgggttccattggccctaccaaccgcacggcctctctc
tctcccgacgtaaacgaccccggtttccgcgccgttacgtttgacgaactcgtcgatgcc
tattacgaacaggtacaggccctgaccgacggcggggcggatgtgatgctggtcgaaacc
atctttgatacgctcaacgccaaagcagccctgtacgccattgacctgtactttgacgac
gtaaaaaaaggcactgttcgccccattcgcggtgcgttccggccggcatcggtcaatacg
actaaaatccaattgcccatcatggtatcaggtaccattacggatgcttccggacgcacc
ctttcgggccaaaccactgaagcctttctgacctcggtatcgcacatgcccctgctttcc
attgggctgaactgtgcgctgggcgcagatctgatgcgtccttatgtacagacgctggct
actcaggcacccttttatacctccgcgcaccccaatgcaggcctgcccaacgagatgggt
gaatatgaccaaacgccggaacaaatggccgtcatcattgacgactttctgcaaaacggg
ttcatcaatatcatcggcggttgctgcggcaccacgccgccgcacatcaaggccattgcc
gaagtagccgcaaaatacgaaccgcgcgatattcccgaaaatgaccacgtgcagaaactg
tcgggtctggaaccgctcaagatcacgaaagagaccaatttcgtaaacatcggagagcgc
tgtaacgtaacgggttcgaagaaatttgcccgtttgatacgcgaaggaaattacgacgcc
gccattgccgtggcgcgcgaacaggttgataccggtgcgcaggtgatcgacatcaacatg
gatgaaggaatgatcgatggggtgcaggccatgaccaaattctgtaacctgctcatggct
gagcccgacattgcccgcgtgccgttcatggtcgactcctcgaaatgggaagtgatcgaa
gcagggttgaaatgtttgcaggggaaagccattgtcaattctatctcactcaaagaaggc
gaagaaaaattcattcagcaggccgaaaaagtccgccgctacggggcgtcggtggttgtc
atggcttttgacgaagtgggtcaggccgacaactacgaacgccgtctggaaatctgcgaa
cgggcctattggatcttggttaacaaagtaggattccctccgcaggacatcatttttgac
cctaacatcctgaccgtaggtacggggatggaagaacataacaactatgcggtagacttc
atcaacgcgacccgctggatcaaggaacacctgccctacgctaaagtcagcggtggggtt
tccaatgtatcgttctcattcagaggcaatgagcccgttcgcgaagccattcataccgta
tttttgtaccatgccatcaaggcaggtatggacatgggcatcgtgaatgcgggccaactg
ggcgtgtacgacgacctgcccaaagacatgctcgaacactgcgaagacctcatcctgaac
cgtcgcccggacgccaccgagcggatgctggcctttgccgaaaccgttaaatccaaagga
aaagaacaggtcattgatacggcatggcgcgaccaacccgtggccaaacgcctcgaacac
gcgctcatcaaaggattgaccgaatacattgaccaagacgtagaagaagcccgccaaacg
gtcgacaagccgttgcacgtcatcgaaggtccgcttatggacggcatgaacgtggtgggg
gatctgttcggcgaaggaaaaatgtttttaccccaagtggtaaaatcagcacgggtcatg
aagaaggccgtagcctatctgttgccgtttatcgaggaagaaaagaacgcctccccgtca
acgacagagtcagggggctccaaaatcctcctggccacggtcaaaggcgacgtacacgac
atcgggaaaaacatcgtaggggtagtattggcctgtaataattatgagatcatcgacctc
ggcgtgatggtgccgactgataagatattggccgccgccaaagaacacaacgtagacatc
atcggactttcgggcctgatcacgccttcgctcgacgaaatggtgggcgtggccaaggaa
atggaacgtcagggctttaaagtaccgttgctgatcggcggtgccactacctcgcgtatt
cacacggccgtcaagatagatccgcattacagcggtcctgtcattcacgtattggatgcc
agccgggccgtgcccgtggcaggaaagctgacccaaaacgagcagacctatgccgaagcc
ctcgccgacatcaaaaaagaatacgccaaactccgcgaagaccacgccaaacgtcagcag
gccaaagaagccgtcacgatcgaagcagcgcgcgccaataaaaccaagatcgattgggaa
acctttacgccggttaaacctgcgtttttgggcaacaggtacttctacgattatccgctg
gaagagattgccaaatacatcgactggacgcctttcttccaaacctggcagttacacggc
aaataccctaaaatatttgacgatgctgtggtaggaaacgaagccaaaaagctctacaac
gacgccaaggccatgttggccgaaattatccaaaataagtcgttgaaagccaacgcggtc
atcgggttttaccccgccaattccgtaggagatgatattgtgctgcacgattttgaagaa
gtggaagtacgttttgccggacagggccaaaagaaacgcaccgaataccgtgttgttctg
tcatcaggcgcttccgaagtcggaacttcgcagaaaacggagaccgattttcaatctgcc
caaaccgtgttgcatcatctgcgccagcaaaaccaaaaagccgccaatttgcccaatctg
tgtctgtcggattatattatgccgctctcgggtgataaacccgaggccataaacgacggg
attacaaatcccgccgagccgctgcggaccgactacatcggcgcctttgccgtcacggca
ggcattggcatagaagctttattggaaaaatacgaagccgatcacgacgattacaacagc
atcatggtcaaagccgtagccgaccgtttggcggaggcgtttacagagctcatgcacgag
cgtgttcgcaaagaatattggggttatgtaaaagacgaggctctttccaacgaagaattg
atttcagaaaaataccaaggaattcgccctgcccccgggtatccggcctgccccgagcac
accgaaaaacgcacgttgtttgacctgcttgacgccgaagcacagatcggtattcagttg
accgagagtttcgccatgtatccggccagttcggtaagcggttggtactttgcgcacccg
gattcacggtattttgccctcggaaaaatcgccaaagatcaggtacaggactacgccgcc
cgcaaaggcatgacgctcgaggaagccgaaaaatggctttcacccgtgttgaattacgac
taa
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