Ruminococcus sp. SR1/5: CK1_31700 Help Entry CK1_31700         CDS       T02601                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism rum  Ruminococcus sp. SR1/5 Pathway rum03030   DNA replication rum03410   Base excision repair rum03420   Nucleotide excision repair rum03430   Mismatch repair Brite KEGG Orthology (KO) [BR:rum00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     CK1_31700    03410 Base excision repair     CK1_31700    03420 Nucleotide excision repair     CK1_31700    03430 Mismatch repair     CK1_31700  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:rum03032]     CK1_31700    03400 DNA repair and recombination proteins [BR:rum03400]     CK1_31700 Enzymes [BR:rum01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      CK1_31700 DNA replication proteins [BR:rum03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      CK1_31700 DNA repair and recombination proteins [BR:rum03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      CK1_31700    NER (nucleotide excision repair)     GGR (global genome repair) factors      CK1_31700    MMR (mismatch excision repair)     DNA ligase      CK1_31700   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       CK1_31700 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB BRCT PTCB-BRCT HHH_2 HHH_5 Lar_restr_allev BRCT_2 Aurora-A_bind Motif Other DBs NCBI-ProteinID:  CBL20998 LinkDB All DBs Position complement(2801283..2803298) Genome browser AA seq 671 aa AA seqDB search MNHPNELSNVEKIKQLVDYLNLQRNAYYNENSPNISDAEYDRIFDELVELEKQTGFILSN SPTQTVGYTPISELPKVKHPVPLLSLDKTKQVQDLISFAGKQPVLFMLKLDGLTTKLVYE NGTLVEASTRGDGEIGELITHNIPAYVDVPLSIPYKGRLVIVGESFIPTHDFERLKETLR DGKGEPYKNGRNLASGSVRSLDPANCAGRCLHFMPFNVLEGLDSPFLFPDSRAMKISSLF DYGFQPCPYIAANHPLTSELVNQYIERLTDLAGKKHLPIDGIVMIFDSLDYSKNCGRTGH HYKDGLAFKFEDETYETTLRNIEWTPTRFGEIAPVGVFDPVEIDGCSVSRATLHNLTFIK ELELVPGCRISVSKRNMIIPHIEENLERGHYVDAVPPVCPCCGSQTRIYQRKGNDGRLIE TVHCDNPNCDSQIRKRFTHFVGKKAMNIEGLSETTLEKFLTLGYLQTFPDIYHLNEHQEE ILQLEGFGKKSFERLWNSITSSRNTTFVRFLVSMDIPMVGRTKSRILDTVFHGSLQEFFD AASGDYDFTQLDDFGDTLNQNIHDWFSDENNLILWHELQKELIFEERKEMNTMMKENVFT GCTIVATGKLAHFTRDEINSKILELGAKAGSSVTKKTDYLICGEKAGSKLAKAQSLGIKI LSEDEFLEMIA NT seq 2016 nt NT seq  +upstreamnt  +downstreamnt atgaaccatcccaatgaattatcaaacgtggaaaaaatcaaacaactggtggactatctg aatttacagcgtaacgcttattataatgagaacagtccgaatatcagtgatgcggaatat gaccgaatcttcgatgaattagtggaattagaaaagcagacaggctttatcttatccaat tcaccgacacaaaccgtaggctatactcccatcagtgaacttcccaaagtaaagcatcca gtccctttgctctctttagataagacaaagcaggtacaggacttgataagctttgccggt aagcagccggttctgtttatgctgaagttggacggattaacgactaaattggtctacgaa aatggaacacttgtagaggcttctacgcgtggcgacggagaaattggggaacttatcacc cataacatccctgcatacgttgatgtccctctttcaattccatataaaggccggctagtg attgttggagaatccttcatcccaacccatgactttgagcgtttaaaagaaaccctccga gatggaaaaggagaaccttacaaaaatgggcgaaatctggcttctggctctgtgcgaagt cttgatccggcaaattgtgcaggacgctgtctgcactttatgccttttaatgttctggaa ggtctggactctccatttctctttccagacagcagagctatgaaaatttccagcctgttt gactatggttttcagccttgtccttatattgctgcaaaccatcccttaacctcggaactt gtaaatcagtatattgaaaggctgactgatctggcaggcaaaaaacatctgcctattgac ggaattgtaatgattttcgacagtctggactattccaaaaactgcgggcgtaccggacat cattataaagatggactggcttttaagtttgaagacgaaacttacgaaaccactcttcgc aatatagaatggacacccacccgtttcggagaaattgcacctgtgggagtttttgaccct gtggaaattgacggatgctctgtttccagagcaacccttcacaatctgacctttatcaaa gaattagaattggtgccaggttgtagaatttctgtatcaaaacgtaatatgatcattcct catattgaagaaaatctggaacgtggtcattacgtagatgcagttcctcctgtatgtcca tgctgtggttctcagactcgtatctatcaaagaaaaggaaatgatgggcgtctcattgaa acggtgcattgtgacaatcccaactgtgatagccagatccgaaaacgctttacacatttc gttggaaaaaaagcaatgaacatcgagggactctccgaaactaccttggaaaaattcctg actttgggttatctccagacatttccggatatttaccatctaaatgaacatcaggaagaa atcttacagttggaaggtttcggtaaaaaatcctttgaaagattatggaattccattact tccagccggaatactacctttgtccggttcctggtttccatggatattcctatggtcgga aggaccaaaagcaggattttggatacagtattccacggcagtctacaggaattttttgat gctgcctctggtgactatgatttcacccagttagatgactttggtgatactctgaatcag aatatccatgactggttttctgatgaaaacaatttaattctctggcacgaactccaaaaa gaacttatatttgaagaaagaaaggaaatgaatactatgatgaaagaaaatgtatttaca ggatgtactatcgttgcaacaggaaaacttgctcattttacaagagatgaaatcaactcg aagattttagagcttggagcaaaagccggcagttctgtcacaaaaaagacagattatcta atttgtggggaaaaagccggcagtaaattagcaaaagcccagtctctcggcattaagatt ttatctgaagatgagtttcttgaaatgattgcgtaa

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