Silicimonas algicola: EF888_10540
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Entry
EF888_10540 CDS
T05779
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
salo
Silicimonas algicola
Pathway
salo03030
DNA replication
salo03410
Base excision repair
salo03420
Nucleotide excision repair
salo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EF888_10540 (ligA)
03410 Base excision repair
EF888_10540 (ligA)
03420 Nucleotide excision repair
EF888_10540 (ligA)
03430 Mismatch repair
EF888_10540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salo03032
]
EF888_10540 (ligA)
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_10540 (ligA)
Enzymes [BR:
salo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EF888_10540 (ligA)
DNA replication proteins [BR:
salo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EF888_10540 (ligA)
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EF888_10540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EF888_10540 (ligA)
MMR (mismatch excision repair)
DNA ligase
EF888_10540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EF888_10540 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
DUF1192
Motif
Other DBs
NCBI-ProteinID:
AZQ67531
UniProt:
A0A316G8P3
LinkDB
All DBs
Position
complement(2117197..2119332)
Genome browser
AA seq
711 aa
AA seq
DB search
MKDVSSLSPAEAGAELARLAREIARANEAYHAKDAPEISDADYDALKRRNAEIESAFPDL
KRGDSPSDQVGAAPSEGFQKVTHSIPMLSLGNAFEDEEVTEFDRSVRKYLGLSADASLAY
VAEPKIDGLSLSLRYEGGALISAATRGDGATGENVTVNARTIDDIPATLKDAPDVLEVRG
EVYMSHADFAALNTRQEEAGGKTFANPRNAAAGSLRQLDPKITAARPLRFYAYGWGSLSQ
PLADTQKGAIDRLATLGFVTNDMMRLCDGPDEMLEQYRLIEEKRATLGYDIDGVVYKVND
LALQSRLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLTPVTVGGVVV
SNATLHNEDYIAGRSADGTPIRDGKDIREGDWVQVYRAGDVIPKVADVDVAKRPKDATPY
EFPTVCPRCGSDAIREDGDAVRRCTGGLICPAQAVERLRHMVGRSAFDIEGLGAKQVEQF
FEDGWIAEPADIFTLRDRKGVELREREGWGEKSAENLLDAIDARRTVAFERFLFSLGIRH
LGEVAAKDLARHFHDWPTLAQTADTAASEPAAEAEGRDALAKSPAWSEFLSIDGVGQTLT
RSLVTTLAQAEERALIDRLAAHLTIEAPAARATDSPVAGKTVVFTGTLEKMTRAEAKARA
ESLGAKVAGSVSAKTDLLVAGPGAGSKAKKAVELGIETIDEDGWLALIADA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgtatcctccctttcgcccgctgaggcgggcgctgagcttgcccggcttgcc
cgcgagatcgcgcgcgcgaacgaggcctatcacgccaaggacgcgcccgagatatccgac
gcggactacgacgcgctgaagcgccgcaatgccgagatcgagtctgcctttccggacctg
aagcgcggggattctccgtccgaccaggtcggcgcggcgccgtccgagggctttcagaag
gtcacccactcgatcccgatgctgtctctgggcaacgccttcgaggatgaagaggtcacc
gagttcgaccgctcggtgcgcaagtatctgggcctttccgcggatgcgagcctcgcctac
gtcgccgaacccaagatcgacgggctgtcgctgtcgctacgctatgaaggcggcgcgctg
atctcggccgccacgcggggcgacggcgcgacgggcgagaacgtgacggtcaatgcgcgc
accatcgacgacatccccgcgacattgaaagacgctccagatgtcctcgaggtccggggc
gaggtctacatgagccacgctgacttcgccgcgctcaacacgcggcaggaagaggcgggc
ggcaagaccttcgccaacccgcgcaacgccgctgccggatctctgcgccagcttgacccg
aagatcaccgcggcgcggccgctccggttctatgcctacggctggggcagcctctcgcag
cctctcgccgacacccagaagggcgccatcgaccgtctggcgacgctcgggttcgtcaca
aacgacatgatgcgtctctgcgacgggccggacgagatgctggagcagtatcgcctgatc
gaggaaaagcgcgcgacgctcggctacgacatcgacggggttgtctacaaggtcaacgac
ctcgccctccagtctcgcctcggcttccgttcgaccacaccaaggtgggccatcgcgcac
aaattcccggccgagctggcctggacccggctcgagaagatcgagatccaggtcgggcgg
acgggcgccctgtctccggtggcgcgcctgacgccggtgaccgtgggtggcgtcgtggtg
tcgaacgcgacgcttcacaacgaggattacatcgccgggcggagcgccgacggcacgcct
attcgtgacggcaaggacatccgcgaaggcgactgggtgcaggtctatcgcgccggcgac
gtgattccgaaggtcgccgacgtcgacgtggcgaagcggccgaaggacgcgaccccctac
gaatttcccacggtctgcccccgctgcgggtcggatgcaatccgcgaggacggcgacgcc
gtgcgccgctgcacgggcgggctgatctgccccgcgcaggcggtcgaaaggctgcgccac
atggtcggccgctcggccttcgacatcgaggggctgggcgccaagcaggtcgaacagttt
ttcgaggacggctggattgccgagcccgccgacatattcaccctgcgcgaccggaagggc
gtcgagttgcgcgagcgggaaggctggggcgagaagtccgccgagaaccttctcgacgcc
atcgacgcgcgccgcaccgtggccttcgagcgcttcctcttcagccttggcataaggcac
ctgggcgaggtcgcggccaaggacctggcccgacacttccatgactggccgacgctcgcc
cagacggccgacaccgcggcgtccgagcctgcggccgaggccgaggggcgagacgctctg
gcgaagagccctgcctggtcggagttcctgtcgatcgacggggtcggccagaccctgacg
cggtcgctggtgacgacgctggcgcaggccgaggaacgcgccttgatcgaccggctggcc
gctcatctgaccatcgaggcccccgccgcccgggcgaccgacagccccgttgccggcaag
accgtcgtcttcaccggcacgctcgaaaagatgacgcgggccgaggccaaggcgcgggcc
gaatccctgggcgccaaggtcgcgggcagcgtctcggccaagaccgatctcctcgtcgca
ggaccgggggcggggtcgaaggcaaagaaggcggtcgagcttgggatcgagaccatcgac
gaggatggctggctcgccctcatcgccgacgcatga
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