Sphingomonas bisphenolicum: SBA_ch1_26000
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Entry
SBA_ch1_26000 CDS
T08354
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
sbin
Sphingomonas bisphenolicum
Pathway
sbin03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SBA_ch1_26000 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbin03400
]
SBA_ch1_26000 (nth)
Enzymes [BR:
sbin01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SBA_ch1_26000 (nth)
DNA repair and recombination proteins [BR:
sbin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SBA_ch1_26000 (nth)
Prokaryotic type
SBA_ch1_26000 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BBF70400
LinkDB
All DBs
Position
1:2652606..2653268
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AA seq
220 aa
AA seq
DB search
MNKAQIFDFFSRLAEANPAPVTELEYGNPYQLLVAVTLSAQATDVGVNKATRALFRAVQT
PQQMVELGEEGLKAHIKTIGLFNTKAKNVIGLSEILVRDFGGEVPEDRDTLTTLPGVGRK
TANVVVNTAFGQETFAVDTHIFRVGNRTGLAPGKTVLAVEQQLDKKVRGPFRRDAHHWLI
LHGRYVCKARKPECWRCIVADLCRFKPKTPAPKTAAAKAA
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaaggcgcagatcttcgatttcttcagccggctggcagaggccaatcccgcgccg
gtgacggagctggaatatggcaatccctatcagctgctggtggcggtgacgctgtcggcg
caggcgaccgatgttggcgtcaacaaggcgacccgcgcgctgtttcgcgcggtccagacg
ccccagcagatggtcgagctgggcgaggagggattgaaggcgcatatcaagaccatcggc
ctgttcaataccaaggcgaaaaatgtcatcggcctgtcggagatactggtgcgcgatttc
ggcggcgaggtgccggaggatcgcgacacgctgaccaccctgcccggcgtcgggcgcaag
accgccaatgtcgtggtcaacaccgccttcgggcaggagacgttcgcggtcgacacccat
attttccgcgtcggcaatcgcacggggctggcgccggggaagaccgtgctggcggtcgag
cagcaactggacaagaaagtccgcggcccgtttcgccgggatgcgcaccactggctgatc
ctgcatggccgctatgtctgcaaggcgcgcaagcccgaatgctggcgctgcatcgtcgcc
gacctgtgccggttcaagcccaagacgcccgcacccaagacagcggcggccaaggcggcc
tga
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