Salicibibacter cibi: HUG20_05720
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Entry
HUG20_05720 CDS
T07369
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scib
Salicibibacter cibi
Pathway
scib03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HUG20_05720 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scib03400
]
HUG20_05720 (ligD)
Enzymes [BR:
scib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HUG20_05720 (ligD)
DNA repair and recombination proteins [BR:
scib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HUG20_05720 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QQK79438
UniProt:
A0A7T6Z9K1
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All DBs
Position
complement(1137116..1138912)
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AA seq
598 aa
AA seq
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MSFMLAVSRKQLPEGEQWHYELKYDGYRAQLIWDGSTCILFSRNHNRLEKQFPEIIDTCH
RYFPKKTVHLDGEIVLFQNPGLADFHALKRRHRLRSQTSIHAASRKRPACFLAFDVLVAE
DRELKNESYIKRKKELESTFVDFGLPTNPTPHDTRRIQSIPMYEHAEIIQYQANLYRSEG
IVAKTNQHIYTGERSESWLKIKTPYVLSCFILSYTPANGYFEVGVYKNGEAVTLGQCAHG
LSKMEKETLVTIIKHNGRWNAEARKHEIDPSIVVTLAFTTYSNDFREAQFQSFELNTPAS
RCTWETWENAGLKWPKRVALTHPDKALWEAPKIFKRDFLAYTRTVAPFCLPHLAKRLLTV
VRYPHGRFGEAFFQKQCPDYAPSYVDTETFEDTDYIVANHVDTLLWLANQLAIEWHIPFS
LSSNRYVEEIVLDLDPPDAGAFSLAIDGANVLKELFDRLGLTSFVKFSGNKGLQVYIPLI
KNRYTYEETHPFTEAIGAYCLQQRPDLFTRERFKKNRGRKLYIDIPQYAFGKTIIAPYSL
RGNGEALVACPLFWEEVSSNLDRTVFTLHGVQQRLEDQGCPFLPYMKTQNQLPDFDRR
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
gtgtcattcatgttagcagtcagtcggaagcaacttcccgaaggagaacaatggcattat
gaattaaaatacgacggctatcgcgcgcagctaatttgggacgggtcgacatgcatcttg
ttcagccgtaatcataatcgtttggaaaaacaatttcccgaaatcatagacacttgccat
cggtattttccgaaaaaaaccgtgcatctcgacggtgaaatcgtactttttcaaaacccg
ggacttgccgattttcatgccctgaaacgtcggcatcgccttcgttcacaaacttccatt
catgccgcaagccgcaaacgtccggcgtgctttctcgcctttgatgtcctcgtagccgag
gatcgggaattgaaaaatgaatcctacataaagagaaaaaaagaactggaaagcacgttc
gtggattttggcctgcctactaatccaacgccgcatgatacacgccgcatacaatctatc
cctatgtatgagcatgctgaaattattcaatatcaagccaatctatatcgtagcgagggg
attgttgccaaaacaaaccagcatatttacaccggggaacgctcggaatcctggttaaaa
ataaaaaccccttatgtgctttcttgtttcattctttcttacacacccgctaatggatat
tttgaagttggggtttataaaaatggagaggctgtcacccttggtcagtgtgcccatgga
ctttcaaaaatggaaaaagaaacgcttgtcaccatcataaaacataacggcagatggaat
gcagaagcacgcaagcatgaaatcgatccgtccatcgttgtgacactcgcgtttacgacc
tacagcaatgattttcgggaagcccagttccagtcatttgaactcaacacccctgcaagc
agatgtacatgggaaacgtgggaaaatgccgggctgaaatggccaaagcgggtagcgctc
acccaccctgataaagccttgtgggaagcacccaagattttcaagcgcgattttcttgcc
tatacacgaacggtcgcacctttttgcctaccccatctcgccaaacggttactaactgtc
gttcgttacccgcatggtaggtttggcgaagcttttttccaaaaacaatgcccggattac
gccccttcctatgtagataccgaaacctttgaagataccgattatattgttgccaatcat
gtcgataccttgctgtggcttgccaatcaactggccatcgaatggcacattccattttca
ctgtcttcgaaccgttatgtcgaggagatcgtccttgatcttgacccgccggatgcggga
gctttttcattggcgatcgatggtgcaaatgttttgaaagaactcttcgaccggctagga
ttaactagctttgtaaaattctccggtaataaaggattacaagtgtatatcccccttatc
aaaaaccgatacacatacgaagaaacgcatccgtttacggaagcgatcggtgcctattgc
ctgcaacaaagacctgatttatttactcgggaacgtttcaaaaaaaaccgtgggagaaaa
ttgtatattgatattccccaatacgcatttggcaaaaccattattgcgccttattccctc
aggggaaacggggaagcgctcgttgcctgtcctcttttctgggaagaagtgtcttctaac
cttgaccgtacagtattcaccctccacggtgtgcaacaacggctagaggatcaaggttgc
cctttcctcccctatatgaagacgcaaaatcagctccctgatttcgatcgccgttga
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