KEGG   Shigella dysenteriae Sd197: SDY_2024
Entry
SDY_2024          CDS       T00306                                 
Symbol
ycfD
Name
(GenBank) conserved hypothetical protein
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
sdy  Shigella dysenteriae Sd197
Brite
KEGG Orthology (KO) [BR:sdy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sdy03009]
    SDY_2024 (ycfD)
Enzymes [BR:sdy01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     SDY_2024 (ycfD)
Ribosome biogenesis [BR:sdy03009]
 Prokaryotic type
  ribosomal protein modification factors
   SDY_2024 (ycfD)
SSDB
Motif
Pfam: JmjC_2 ROXA-like_wH Cupin_1 Tup_N
Other DBs
NCBI-ProteinID: ABB62119
ShiBASE_China: SDY2024
UniProt: Q32EY6
LinkDB
Position
1833017..1834147
AA seq 376 aa
MLNMEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQ
DGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSV
PGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLLQVDPFEAIIDEELEPSD
ILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRA
HPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDAL
KQGDVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFL
AMLAALVNSGYWFFEG
NT seq 1131 nt   +upstreamnt  +downstreamnt
atgcttaacatggaataccaactcactcttaactggcccgattttcttgaacgtcactgg
cagaaacgcccggtggtgttaaaacgcggctttaataattttattgacccgatctctcca
gacgagttggcgggtctggcgatggaaagcgaagtcgacagtcgactggtcagtcaccag
gatggaaaatggcaggtcagccacggtccgttcgaaagctacgatcatctcggtgaaact
aactggtcattgttagtgcaagcagtgaaccactggcatgagccgaccgccgcgctgatg
cgaccgttccgtgaactaccggactggcgtattgatgatctgatgatctctttttctgta
cctggcggcggcgtcggcccgcatctcgatcagtacgacgtgtttatcattcagggtacc
ggacgtcgtcgctggcgagtgggcgaaaagttgcaaatgaaacagcactgcccacatccg
gatctgttacaggtcgatccgttcgaagccatcatcgatgaagagctggagcctagtgat
attctttatattccgccaggattcccgcatgaaggctacgcgctggaaaatgcgatgaac
tattccgtgggttttcgcgcgccaaatacgcgggaactgattagtggatttgccgattat
gtgctgcaacgtgaactgggcggcaactactacagcgatcctgatgttccacctcgcgct
catcctgcggatgttctgccgcaagagatggataaactgcgtgagatgatgctcgaattg
atcaaccagccggaacactttaagcaatggtttggggagtttatatcccagtcacgtcat
gaactggatatcgcgccgccagagccgccttatcagccggatgaaatctacgatgcgctg
aaacaaggtgatgtgctggtgcgcctgggtggtctgcgcgtattgcgcattggcgacgac
gtgtatgccaatggtgagaagatcgattccccgcaccgtccggcactggatgcactcgcc
agcaacattgcgctgactgcggagaattttggagatgcgctggaagatccgtcattcctc
gcgatgctcgcggcgctggtcaatagcgggtattggttcttcgaagggtaa

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