Streptomyces griseochromogenes: AVL59_19720
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Entry
AVL59_19720 CDS
T04729
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgs
Streptomyces griseochromogenes
Pathway
sgs03030
DNA replication
sgs03410
Base excision repair
sgs03420
Nucleotide excision repair
sgs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AVL59_19720
03410 Base excision repair
AVL59_19720
03420 Nucleotide excision repair
AVL59_19720
03430 Mismatch repair
AVL59_19720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgs03032
]
AVL59_19720
03400 DNA repair and recombination proteins [BR:
sgs03400
]
AVL59_19720
Enzymes [BR:
sgs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AVL59_19720
DNA replication proteins [BR:
sgs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AVL59_19720
DNA repair and recombination proteins [BR:
sgs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AVL59_19720
NER (nucleotide excision repair)
GGR (global genome repair) factors
AVL59_19720
MMR (mismatch excision repair)
DNA ligase
AVL59_19720
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AVL59_19720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH_3
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
ANP56633
UniProt:
A0A1B1BCS3
LinkDB
All DBs
Position
4651767..4653851
Genome browser
AA seq
694 aa
AA seq
DB search
MTTSAAVIVDAAAYAQAVDDAVGAAAAYYAGGTSPLDDDAYDRLVRGIAAWEAAHPDQVL
PESPTGKVAGGAVEGDVPHTVPMLSLDNVFSAEEFTAWTASLARRIGHDVQRLGVGPKLD
GLAIAARYTRGRLTRLITRGDGTAGEDVSHAIGTIEGLPETLAEPVTVEVRGEVLMTTAQ
FEHANEVRTAHGGQPFANPRNAAAGTLRAKERAYTVPMTFFGYGLLPVPDTDPALAERLT
TSAHSDLMNMAAAFGVHTSAQTAVQDVVAHNPEQVLARVKEIAASRAELPFGIDGIVIKA
DLAEDQQAAGSGSRAPRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRAVLEPVVIDGS
TITYATLHNPADITRRALLLGDHVMVHRAGDVIPRIEAPVTHLRTGDEQTIAFPEQCPRC
GSDIDTSEERWRCAQGRNCHLVASLAYAAGRDQLDVEGLGTTRIVQLVDAGLVTDLADLF
TLKREQLLGLERMGETSTDNLLTAIAKAKEQPLARVLCALGVRGTGRSMSRRIARHFATM
DNIRAADAEAMQQVEGIGTEKAPSIVAELAELAPLIDKLAAVGVNMTEPGATPPSADATG
PDGTAAASPQAGPLAGMTVVVTGAMTGALEKLSRNEMNELIERAGGRSSSSVSKKTALVV
AGEGAGSKRAKAEQLGIRLATPDDFAGLVADLLA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgacgacttctgcagcagtgatcgtggatgccgccgcctatgcgcaggcggtcgatgac
gcggtgggcgcggcggccgcctactacgcaggtggcacctcgccgctggacgacgacgcc
tacgaccggctggtccgggggatcgccgcgtgggaggcggcgcacccggatcaggtgctg
cccgagtcccccaccgggaaggtcgccggtggcgcggtcgagggcgatgtgccgcacacc
gtccccatgctcagcctcgacaacgtgttctccgcggaggaattcactgcctggacggcg
tctttggcccgccgcatcgggcatgatgtccaacggctcggcgtggggccgaagctggac
gggctggcgatcgccgcccgctacacccgtggacggctgacccggctgatcacccgcggg
gacggaacggccggagaggacgtctcgcacgcgatcggcaccatagaggggctgcccgag
acactggccgagccggtcaccgtggaggtacgcggcgaagtactcatgacgaccgcccag
ttcgagcacgccaacgaggtgcgcacggctcacggcggccagccgttcgccaacccgcgc
aacgcggccgccggcacgctgcgggccaaggagcgcgcctacacggtcccgatgacgttc
ttcggctacggcctgctgcccgtccccgacaccgacccggcccttgccgaacggctgacc
acatccgcccacagcgacctgatgaacatggccgctgccttcggagtgcacaccagcgcc
cagaccgccgtccaggacgtggtcgcccacaaccccgagcaggtcctggcccgggtgaag
gagatcgccgcctcgcgtgccgaactgccgttcggtatcgacggcatcgtcatcaaggcc
gacctcgccgaggaccagcaggcagccggatccggctcccgcgcaccacggtgggcgatc
gcctacaagctgccggccgtcgagaagatcacccggctgctggaggtggagtggaacgtc
ggccgcaccggcatcatcgccccgcgcgccgtcctcgaaccagtcgtgatcgacggctcc
accatcacctacgccaccctgcacaacccggccgacatcacccgccgcgccctgctcctg
ggcgatcacgtcatggtccaccgcgccggagacgtcattccccgcatcgaggccccggtc
acccacctgcgcacgggcgacgaacagaccatcgccttccccgaacagtgcccgcgctgc
gggtccgacatcgacacgagcgaagaacgctggcggtgcgcgcagggccgcaactgccat
ctggtcgcctccctcgcctacgcggcgggccgcgaccagctcgacgtcgagggcctgggc
accacccgcatcgtccagctcgtcgacgcgggcctggtcaccgatctcgccgacctgttc
accctgaaacgcgagcagctgctcggcctcgaacggatgggcgagaccagtaccgacaac
ctcctcaccgcgatcgcgaaggccaaggagcagccgctggcgcgggtgctgtgcgcgctc
ggcgtccgcggtacgggccgctccatgtcacggcgtatcgcgcgccacttcgccaccatg
gacaacatccgcgccgccgatgccgaagcgatgcagcaggtcgagggcatcggaaccgag
aaagccccctccatcgtcgcggaactcgccgaactcgccccgctcatcgacaaactcgcc
gccgtcggagtcaacatgaccgagcccggcgccacccctccctcggccgacgccaccggc
ccggacggcacggccgcggcttcgccacaggcgggtccgctggcggggatgaccgtggtg
gtcacgggtgcgatgacaggcgcactggagaagctctcccgtaacgagatgaacgaactc
atcgaacgagccgggggacgctcctcctccagcgtctccaagaagaccgccctggtcgtc
gcgggcgagggagcgggttccaagcgtgccaaggccgagcaactcggcatccgcctcgcc
acccccgacgacttcgccggcctggtcgccgacctcctcgcctga
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