Sphingomonas hankookensis: PPZ50_00065
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Entry
PPZ50_00065 CDS
T08811
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PPZ50_00065 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_00065 (nth)
Enzymes [BR:
shan01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PPZ50_00065 (nth)
DNA repair and recombination proteins [BR:
shan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PPZ50_00065 (nth)
Prokaryotic type
PPZ50_00065 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
SDE2_2C
Motif
Other DBs
NCBI-ProteinID:
WCP72002
LinkDB
All DBs
Position
complement(10940..11602)
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AA seq
220 aa
AA seq
DB search
MKKADIFEFFRRLAEDNPHPETELESVNDYTLLVAVVLSAQATDAGVNKATRALFATVDT
PEKMVALGLDGLKHHIRTIGLFNTKAKNVIALSEALIAGHGGQVPNDRAALEKLPGVGRK
TANVVMNVAFGAETFAVDTHIFRVGNRTGLARGKTPNAVESVLERVVPQPFRLHAHHWLI
LHGRYICKARRPECWRCPVADLCAFKPKTPAPKQKAVATD
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaaggccgatatcttcgagtttttccggcggctggcggaggacaatccgcacccc
gaaaccgaactcgaatcggtcaacgactatacgctgctggtcgcggtcgtgctgtcggcg
caggcgaccgatgccggcgtgaacaaggcgacgcgcgcgttgttcgccaccgtcgacacg
cccgaaaagatggtcgcgctcggtctcgacggcctgaagcaccacatccgcaccatcggc
ctgttcaataccaaggcgaagaacgtcatcgccttgtccgaagcgctgatcgccggccat
ggcggacaggtgccgaacgaccgtgccgcgctggaaaaactgcccggcgtcgggcgcaag
accgccaatgtcgtgatgaacgtcgcgttcggcgcggaaacctttgcggtcgacacccat
atcttccgcgtcggcaaccgcaccggcctggcgcgcggcaagacgccgaacgcggtcgaa
tcggtgctggaacgtgtcgtgccgcagccgttccgcctgcacgcgcatcactggctgatc
ctgcacggccgctatatctgcaaggcgcgccgccccgaatgctggcgctgtccggtcgcc
gacctgtgcgcgttcaagcccaaaacgcctgcaccgaagcaaaaggcggtcgcgaccgac
tga
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