Spinacia oleracea (spinach): 110783062
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Entry
110783062 CDS
T05137
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
soe
Spinacia oleracea (spinach)
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
soe03036
]
110783062
03400 DNA repair and recombination proteins [BR:
soe03400
]
110783062
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
110783062
DNA repair and recombination proteins [BR:
soe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
110783062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
110783062
NCBI-ProteinID:
XP_056694423
LinkDB
All DBs
Position
3:complement(5779352..5797385)
Genome browser
AA seq
1684 aa
AA seq
DB search
MDGTKRKFQSIQKIYNKNDDEGDKVYRFNVLLPNGINVPMIRRNPENESISLEFFVDRVK
EKCSAILRQKDDNKPRRRVFWESTELYLEDVKGNKFRREVRFDDFVPNKTHLLKLFDGVD
QTVDAFENMWDLTPDTDLLTELPEDYTFETALADLIDNSLQAVWSNGKGERKLISVEVDA
DKISVFDTGPGMDGSDEKSIVKWGKMGASVHRSSKKLAIGGKPPFLTPFFGMFGYGGTIA
SMHLGRQAVVSAKTRESKKVYWLCLDRDALVKRSGSDLNWKAPGGMRDPSDSEIEMSPHG
SFTKIVMKPKLKLPDMFQLQCKLKDIYFPYIQCDEVSKAGRTTTLVDFQINGINLAEVEG
GEVAVTNLHSCNGPDFVLNLHLYIEEEKAASKSPNVKPVREGNARLKCVYFPITEGKESI
QRILDNLNPDGYDIKEDYESFSRISIRRLGRLLPEARWDLLPFMKPKQKRGAKVQILKRC
CSRVKCFVDTDAGFNPIPSKTDLAPHHPFTRALKDLGGDTLHKEKVVQVNITRGGKQLTL
QQLEREYQAWIFQMHGQYDDECNTGDDEPVYLVNANKEALGITSDVVRVHQAISRKGRSW
SRGQKVKILKGACTGCHKNNMFAVLEYFLLDGLEKDVGGEARIICRPLGVEDEDGSLLTV
DASGTNLELRSSISLPIIAIDSGKCVPVNDDDWNFQADKLILKMPSTIEVLGQKQCKVLD
IDGALPTDDTVSAGSLPPKEVVAILRPSNFSPSTTTNELDQKYILRDDYEMCLNVKFKAG
ADDYLKFDQFYTVTVTNTSRRGCQGLYIFSVGSIPSLFQKAGTYSFTFSLKNSATASCEK
IVRVKASAKVKRWGLLKDNDKDLPLSASAGSCFPPLSFCRYDEYDNIIPFKGTQQIECQL
MSNGTLISHLKNVKVELSSDMDHMIVTNTRITASNLDKIRPSYEATLALSQPDMQPFLNI
PCQVFPGPLQAVHFSSSESGKGLLPQQVVEDFKLEMFDRHKNHVKQGIEVELVVHGFSFL
DKIGLKRKVDNEGFIDLSGLLKVTEGYGKPVSLSVKYNKNVIANKKFLVEKRELRMVTEV
PEVCPAGSKLKDIAFEVVNAEGDLDQTVNDEIKHGKSHTLRILTDLPNDDSLRYAFRQGR
CTVPSITLPQREGSFFIEAAHSHHHELRVKFKVTLSRSLRAESNTTSDLRATEELDCDEP
QSSVSGAANHVRSKKGFECQNSEVTVPLSVDECDTSSSLKIPKVEHGSPTTAIFSESKLR
KQQAPLEQTSNQQSDSNYEHNSDIFKSPDGKIICAGYYTPKNVVTPLGSDLSDFESAEKE
IHYYGSLIKAQEDDLKWSVVRRSEITEDLRNLQAELEMLPLQLSHSSSMFQKELVLEKIK
NKADSAAAIYSIASQNMSLQDQHPNFMADVVGLVALLATAPTPMLSRSLAEYLGEDQMLG
IVCLSNAAIITPENYETVLKSLAGELGRSFEGRQLVICLEDIRAYDGDVIENDHQRRLDL
ANPTLHDGTTPPGFLGYAVNMIDIDVDHIQVKTVAGRGLRETLFYDLFGDLQVYETKEHI
KHALGCITNAAISLDGGIMHRKGRVLLGSMHVDLHFRVVAEEQEYLSRDEMMKEIENKKL
ELSMVEEAIAYTNEQRESSLNNFREREAGFLKLIEDKEEINKLILSQQTTPMAPMHTQSS
GQLF
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atggatgggacaaagaggaaatttcaaagtattcaaaaaatctacaacaaaaatgatgat
gaaggggataaagtttacaggttcaatgtacttctgccgaatggcataaatgtaccaatg
ataagaagaaacccagaaaatgaaagtatttctttggaattttttgtcgacagagtgaag
gagaaatgctctgcaattttaagacaaaaagatgataacaaacccagaagaagggttttc
tgggaaagtacagagttgtatctggaagatgttaagggtaacaaattcaggagagaagtc
cgttttgatgattttgttcctaacaaaactcatcttctgaagctttttgatggagttgat
cagactgttgacgcctttgagaatatgtgggacttgacaccagacacagatttgttgaca
gagctgccggaagactatacttttgagacggccttagcagatttgattgataattcgttg
caggcagtttggtcaaatggtaaaggtgaaaggaaacttattagtgttgaagttgacgcg
gataaaatttctgtatttgatactggccctggaatggatggaagcgatgagaaatcaata
gtgaaatggggcaaaatgggtgcttcagttcacagatcttcgaaaaaacttgctattggt
ggaaaacctccatttcttacgcctttctttggaatgtttggatatggtggaaccattgca
tctatgcatttaggaaggcaagctgtagtttccgcgaagaccagagagtcaaagaaagtt
tactggctttgtctagatagagatgctttggtaaagagatctggttcagatcttaactgg
aaggctcctggtggaatgcgagatccatcagacagcgagattgaaatgtcacctcatgga
agtttcactaagattgttatgaagcccaaattgaagctccccgatatgtttcaactccaa
tgcaagctcaaggatatttattttccttacattcaatgtgatgaggtatcaaaggcaggg
aggactacaacattggtggactttcagatcaatggcatcaacttagctgaagttgaaggt
ggtgaagtcgcagtaacaaatctgcattcctgtaatggcccagactttgttctaaacctg
catttatatatcgaagaggaaaaggctgcatccaaatctccaaatgtgaaaccagttcgt
gaagggaatgcacgtttgaagtgtgtttactttcccattactgagggaaaggagagtatt
cagagaattttggataacttgaatcctgatggttatgacattaaagaagactatgaatct
tttagtcgtatatccatcaggaggctaggtcgtttgcttcctgaagctcgctgggacctc
ctacccttcatgaagcctaaacaaaagaggggcgccaaagttcaaattctgaagagatgt
tgctcaagagttaagtgctttgttgacacagatgctggattcaatccaataccttcgaag
actgatctagcaccgcatcatcctttcaccagagcactgaaagatctaggaggtgacact
cttcataaagaaaaagtggtacaagtgaacattactagaggtggaaaacaattgactttg
cagcaattggaaagagaataccaagcatggattttccagatgcatggtcaatacgatgat
gaatgcaatactggtgatgatgaacctgtctaccttgttaatgctaacaaagaggcgctt
ggcatcacatctgatgttgtgagggttcatcaagctataagtcggaagggaagatcttgg
agtaggggacagaaagtcaagattctcaaaggggcttgtactggttgtcataagaacaac
atgtttgcagtattggagtattttttacttgacggcttggaaaaggatgtaggtggagag
gcgcgaattatatgcaggccactaggtgttgaggatgaagatggtagtttgcttacagtt
gatgctagtggcacgaacttggaacttcgcagctctatatctctgcctatcattgcaata
gactcaggaaagtgtgttcctgttaacgacgacgattggaatttccaagctgacaagctg
attctgaaaatgccttcaacaattgaagtattgggacaaaaacaatgcaaagttttagac
attgatggggcattacctacagatgatacagtttcagctggatctttacctcctaaagaa
gttgttgctatactgcggccatcaaacttcagtccaagcactaccactaacgagttggat
caaaaatacattttaagggacgattacgagatgtgcctgaacgtaaaattcaaggccgga
gctgatgattacctcaagtttgaccaattttatactgtaactgttacaaatacatcacgt
agaggatgtcagggtttgtatattttttcagtgggatctatcccaagtttatttcaaaaa
gctgggacgtattcctttacgttctctcttaaaaattcagccactgcaagttgtgaaaag
attgtgagggtcaaagcatcagctaaggtcaaacgttggggactcttgaaagataatgat
aaagatcttccattgagtgcgagtgcaggctcttgttttccgccactctcattttgccgt
tatgatgaatatgacaacatcattccattcaagggtacccaacaaatagaatgtcagtta
atgtccaatggtactttaatatcccacctaaagaacgtgaaggtggaactatcatcagat
atggatcatatgattgttacgaatacgaggattacagcttctaatttagacaaaattcgc
ccaagttatgaagctacattggctttatctcagcctgatatgcagcccttcctcaacatt
ccttgtcaagtttttcctggacctcttcaggctgttcatttttcatcatcagaatcaggc
aaaggtctacttccacagcaggtggttgaagattttaaattggagatgtttgatagacat
aagaatcatgtcaaacaaggcattgaagtagagctggtcgttcatggattctctttcctg
gataagattggtttaaagcgcaaggttgataatgagggttttatagatcttagtggcctc
ttaaaagtcacagaaggctatggtaaaccagtatctctgtcggtcaaatataataagaat
gtaattgcaaacaaaaagtttctagttgaaaagcgggagctgaggatggtgacagaggta
cctgaggtttgtcctgcgggttcaaagttgaaagacattgcttttgaagttgtgaatgct
gaaggtgacttagatcaaactgtcaatgacgaaatcaagcatggaaaatcgcacactcta
agaatattgacagaccttccaaatgacgattctttaagatatgcttttaggcaggggcga
tgcactgttccttctattactcttccccaaagagaaggaagtttctttattgaggctgct
cactctcaccaccatgagctgcgtgtgaaatttaaggttaccctatcaagatctttacgt
gcagagtctaataccacctctgatctccgagctacggaagagcttgattgtgatgaacca
caatcttcagtttctggtgctgcaaatcatgtgagatccaagaaggggtttgagtgtcag
aactcagaggtaactgttccgctatctgtggacgagtgtgatacatcatcttccctaaaa
attccaaaggtggagcatggaagtcccacaactgcaatattttctgaatcaaagttgcga
aagcagcaggctccccttgaacaaacttcgaaccagcagtctgattcaaattatgagcac
aacagtgatatatttaaatctccagacgggaagatcatatgtgcgggttattatacgcct
aagaatgtggtaactccactgggatctgatttatcggactttgagagtgctgaaaaggaa
atccactattacgggtcacttattaaagctcaagaagacgacttgaaatggtctgtggtg
cgcagaagtgaaattacggaagacttgaggaatttacaagctgaattggaaatgctgcca
ctgcaattatcacattcaagtagcatgtttcagaaagagttagtactggaaaaaataaaa
aacaaggctgattcagctgctgcaatatacagcattgcttcccagaacatgtctttacag
gatcaacaccccaacttcatggccgatgtggttggcctagtagcccttcttgcaacagcc
cctacacctatgcttagtcgttcattggctgaatatttgggggaggatcaaatgctaggc
attgtctgcctatctaatgctgctataataaccccggagaattatgaaacagtcctaaaa
tccctagctggagagttgggaagaagctttgaaggccgtcaactagttatatgccttgag
gatatcagggcatatgatggggatgtaatagaaaatgatcaccaaagaaggttggactta
gcaaaccctactttacatgatggaacaactccacctggtttcttagggtatgcagtcaat
atgattgacatagatgttgatcacattcaagtcaagacagttgcagggcgtggccttcgc
gagaccctattctatgatctatttggggatcttcaagtgtatgaaacaaaggagcacatt
aaacatgctcttggatgtataacaaatgctgcaatatctctagatggaggcatcatgcac
agaaagggcagagttttgctaggatctatgcatgtggacttgcatttccgtgttgttgca
gaggagcaagagtatttaagcagagatgagatgatgaaggagattgaaaacaagaaattg
gaattgagcatggtggaggaagccattgcttatactaatgaacagagggaaagttctttg
aacaactttcgtgaaagagaagctgggttcttgaaattaattgaagataaggaagaaatt
aacaaacttattttatcgcagcaaacaactccaatggcgcctatgcatacacagagttct
ggtcagttgttttag
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