Sphingomonas paeninsulae: D3Y57_17420
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Entry
D3Y57_17420 CDS
T05706
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spha
Sphingomonas paeninsulae
Pathway
spha03030
DNA replication
spha03410
Base excision repair
spha03420
Nucleotide excision repair
spha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D3Y57_17420 (ligA)
03410 Base excision repair
D3Y57_17420 (ligA)
03420 Nucleotide excision repair
D3Y57_17420 (ligA)
03430 Mismatch repair
D3Y57_17420 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spha03032
]
D3Y57_17420 (ligA)
03400 DNA repair and recombination proteins [BR:
spha03400
]
D3Y57_17420 (ligA)
Enzymes [BR:
spha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D3Y57_17420 (ligA)
DNA replication proteins [BR:
spha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D3Y57_17420 (ligA)
DNA repair and recombination proteins [BR:
spha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D3Y57_17420 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D3Y57_17420 (ligA)
MMR (mismatch excision repair)
DNA ligase
D3Y57_17420 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D3Y57_17420 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
AYJ88094
UniProt:
A0A494TKN2
LinkDB
All DBs
Position
2427361..2429358
Genome browser
AA seq
665 aa
AA seq
DB search
MRLARQIAHHSRAYHTDDAPEISDAEYDALICRNTDLETQFPHLVRADTPSKIVGAAPSA
HLSKVTHAKPMLSLDNAFTDEDVAEFIARVRRFLSLSEGTPVSVTAEPKIDGLSCSLRYE
NGVLVQAATRGDGITGENVTANVATISDIPQNLPAGVPEVFEVRGEVYMAKADFIELNER
LAGERVFANPRNAAAGSLRQKDPEVTRARPLKFLAYGWGDTSALPGVTQHAVMMAIKSWG
FPVSPDLILAASVQEMLAQFRKIESFRADLPFDIDGVVYKIDRLDWQARLGFVAKAPRWA
IAHKFPAERAQTTLLAIDIQVGRTGKLTPVARLEPVTVGGVVVTNATLHNADEIGRLGVR
PGDRVTVQRAGDVIPQILENLTPEAVRPDYVFPSVCPQCQSDAVREDDEVDIRCTGGLIC
PAQRIERLKHFVSRGALDIDGLGEKTIIEFFADDLIHSPADIFRLKSHRQAILTRAGWKE
TSVANLINAIEARRTPDPARFLFGLGIRHVGVVTAKDLVRAFGTVERVAEVAQHADALTE
LSAIEGIGPVVAQALVDFFHEEHNREAWADLLSEVSPLAYVSNVRESALTGKTIVFTGSL
ETLSRDEAKAQAEALGAKTAGSVSAKTDLVVAGPGAGSKLKKAADLNIEVIDEAAWASIV
AAAAV
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcgcccgccagatcgctcatcattcgcgcgcctatcacaccgacgacgcgcca
gagatcagcgatgccgaatatgatgcgctgatttgccgcaataccgatctggaaacccaa
tttccgcacctcgtccgtgccgacacgccatccaaaatcgtgggggctgcgccatcggct
catttgtccaaagtcacccacgcaaagcccatgctgtcgctcgacaatgccttcaccgac
gaagacgttgccgaattcatcgcccgcgtccgacgctttctcagcttgtcggaagggacg
cccgtcagcgtcaccgcagaacccaaaatcgacggattaagctgctcgttacgctatgaa
aacggcgttttggtgcaagcggcgacccgtggcgacgggattacgggcgaaaacgtgacc
gcgaatgtggcgacgatttccgacattccgcagaatttgcccgcaggcgtgcccgaggtt
tttgaagtgcgcggcgaagtctatatggcgaaggcggattttatcgagctgaatgaacgg
cttgcgggggagcgcgtgttcgccaacccacgcaatgccgccgcgggatcgctgcgccag
aaagaccccgaagtcacccgcgctcgcccgctgaagtttctggcttacggctggggagac
acgtccgcgctgccgggtgtcactcaacacgctgtaatgatggcaataaaatcatggggc
tttcccgttagccccgatctgatccttgctgccagtgtgcaggaaatgcttgcccagttc
cgcaagatcgaaagttttcgcgccgacctccccttcgacatcgatggcgtcgtctataaa
atcgatcgtctggattggcaggcgcgattgggttttgtcgccaaggctcctcgttgggcc
atcgcccataaattcccggcagagcgcgcccagaccactttgctcgccatcgatattcag
gtcgggcggactggcaaactcacgccggtagcgcgccttgaacccgtcaccgtcggcggc
gtcgtcgtgacaaatgcgaccctccacaacgccgacgaaatcggccgcctcggcgtccgc
cccggcgaccgtgtcaccgtccagcgggcgggcgatgtcattccacaaattctcgaaaac
ctgacgcccgaagccgtccgccccgactatgtattcccctctgtctgtccccagtgccag
tccgacgcggtgcgtgaggatgacgaggtcgatattcgctgcaccggtggtctgatctgc
ccggcccagcgaatcgagcgactgaaacatttcgtctcacgcggcgcgctcgacatcgac
gggctgggtgaaaaaacgatcattgagttcttcgctgacgacctgatccacagtcctgcc
gacatttttcgcctgaaatcacaccgtcaggcgattctgacgcgggctgggtggaaggaa
acatcggttgccaacctcatcaacgcaatcgaagcgcgccgcacccccgatcccgcgcgc
tttctgttcggcctcggcatcaggcacgtcggcgtcgtcaccgcaaaggatctggtgcga
gcgtttggaaccgtcgaacgcgttgccgaagtcgcccagcacgctgatgcgctcaccgaa
ctcagcgcaatcgaaggtatcggccctgtcgtcgcacaggcgctggtcgatttctttcac
gaagaacacaatcgtgaagcatgggccgacctgctcagcgaagtcagtccgctcgcctat
gtttccaacgtccgcgaatcagctctgaccggcaagacgattgtattcactggatcgctc
gaaaccctgtcccgcgacgaagccaaggcgcaggccgaggcgctgggagcgaaaacggca
ggctctgtttcggcgaaaaccgacctggtcgtggccggaccgggtgctggatcgaagctg
aaaaaggcggccgacctgaacatcgaagtgatcgacgaagctgcgtgggcgtcgattgtt
gcggcggctgctgtctga
DBGET
integrated database retrieval system
