Solea senegalensis (Senegalese sole): 122769343
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Entry
122769343 CDS
T07721
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122769343 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssen03000
]
122769343 (kdm2ba)
04121 Ubiquitin system [BR:
ssen04121
]
122769343 (kdm2ba)
03036 Chromosome and associated proteins [BR:
ssen03036
]
122769343 (kdm2ba)
Enzymes [BR:
ssen01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
122769343 (kdm2ba)
Transcription factors [BR:
ssen03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
122769343 (kdm2ba)
Ubiquitin system [BR:
ssen04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
122769343 (kdm2ba)
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
122769343 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
122769343 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
LRR_4
Motif
Other DBs
NCBI-GeneID:
122769343
NCBI-ProteinID:
XP_043881744
LinkDB
All DBs
Position
LG5:25511863..25522465
Genome browser
AA seq
781 aa
AA seq
DB search
MALSLSGDEEEYDSESEQQRAANRPKPKMGTTSAVKLPSNRSSSSARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEEEK
FNFMLMECSICNEIVHPNCLKVTDASGVVNDELPNCWECPKCNHAGKSGKVLKQKRGPGF
KYASNLPGSLLREQKPVKEEGDASTAAKRRPDREETPRNRPESLAESLHRQPPLLSPSSL
PRQRPEDRLRRKRKLFDDEEEDLILRKKEMSDDPYFSKLLHHIKTEEDEDAYKEEEEDGR
DPHFRNGAERRGRLGDAEEEADDRDSKNELLNRCVKTPVGDSDQSHCSSPQAGPSSEGSS
ETQEKGQRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPETENEEP
KRLFRNGSDLGDPRPHLKSKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPVPPRSPPKC
VQMERHVIRPPPISPPPDRLPLKDGKTHVIQREDWMKIFRFLSHKELCVCMRVCKTWNRW
CCDKRLWAKIDLNRCTSVTPLMLSGIIRRQPICLDLSWTNISKKQLSWLINRLPGLRVLK
LSGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNL
EDLRLAGLDITDTSLRLISRQMPLLSRLDLSYCNHINDQSVNLLTAAGTTTRDSLTEINL
SVCNRVTDHSLNFFKRCGSICQIDLRYCKQVTKAACERFIAEMSVSVPFRLREDKLLQKA
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcattgagtggagacgaagaggaatatgattcagagtcggagcagcagagg
gcagccaaccggccgaagcccaagatggggacgacgtcggccgtcaagctcccgtccaac
cgcagctcgtccagcgcgcggcgcaggaggacgcgctgccggaagtgcgaggcgtgtctc
cggactgagtgcggagagtgtcacttctgcaaggacatgaagaagttcggagggcccggg
cgcatgaagcagtcgtgcatcatgagacagtgcatcgcgcccgtcctgcctcacacggcg
gtgtgcgtggtgtgcaaagaggcggggaaggaggacacgctggaggaggaggaggagaag
ttcaacttcatgctcatggagtgctccatctgcaacgagattgtccatcccaactgcctc
aaggtgaccgacgcgtcgggagtggtgaacgacgaactccccaactgctgggaatgtccc
aaatgcaaccacgcaggcaaaagtgggaaagtattgaagcaaaaaaggggtccgggcttc
aagtacgcctccaacctccccggctctctgctgcgggaacagaagcctgtgaaggaggag
ggagacgcgtccaccgcggccaagaggaggccggaccgagaggagacgcccaggaaccga
cccgagtctctggcggagtctctgcaccggcagccgccgctgctgtctcccagcagccta
cccaggcagagacccgaggaccgactgaggaggaagaggaagctgtttgacgacgaggaa
gaggatctcattttgaggaagaaggaaatgtcagacgatccgtacttctccaaacttctg
caccacatcaaaacggaagaggacgaagacgcgtacaaggaggaggaggaagacgggcga
gaccctcacttccggaacggcgcggagaggagggggcgtttaggagacgccgaagaggaa
gcggacgaccgggactccaagaatgaacttttaaatcgctgcgttaaaacaccagtcggg
gacagtgaccagtctcactgcagctccccacaggccggccccagcagcgagggcagcagc
gagacccaggagaaaggtcagcgtccgaaagcgcgccgcaagcgccgcctcccgaaccgg
gagctgagccgagaactgagcaaagcactgaaccaggagatccagaagacggaggactgc
ctggccaacgagaaccgacagcccctcaaggtggagccggagacggagaacgaggagccc
aagaggctgttccgcaacggcagcgacctcggggacccgaggccgcacctcaagagcaag
gagatgaacgggacgccgtgggagctgaggcacttctacccgagccagatcacgccgctg
ggtttcaaccggagcacgccgaccaaccggccggtgccgccgcggtccccgcccaagtgt
gtccagatggagcggcacgtcattcgcccgcctccgataagcccgccgccggaccggctg
cccctcaaagacgggaagacgcacgtcatccagcgcgaggactggatgaagatcttccgc
ttcctctcgcacaaggagctgtgtgtgtgcatgagagtctgcaagacgtggaacagatgg
tgttgtgataagagactttgggccaaaatcgatctgaaccgctgcacctccgtcactccg
ctcatgctcagcgggattatccggcgacagccgatctgcctcgacctgagctggaccaac
atctccaaaaaacaattaagctggctcatcaacagactcccaggtctgcgggtgttaaag
ttatcgggctgctcttgggccgccgtgtccgcgctctgcacctccagctgtcccctgctg
cgcactctggacgtgcagtgggtcgagggactcaaagacgcacagatgagggacctgctc
tcgcccccaacagataatagaccaggtcagctggataaccggtgcaagttgcgtaacctg
gaggacctgcgcctggcggggctggacatcacggacacgtcgttacgcctcatcagtcgt
cagatgcccctgctgtccaggctggacctgagctactgcaaccacatcaacgaccagtcg
gtgaacctgctgacagcagcgggcaccaccaccagagattccctcacagaaatcaacctg
tccgtttgtaaccgcgtcacggaccattccctaaactttttcaagcgctgtggaagcatc
tgtcagatagacctccgctactgcaagcaggtgaccaaggcggcctgtgaaaggttcatt
gcggaaatgtccgtgagcgtcccgtttagactgagagaggacaaactgctgcagaaggcg
agctag
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