KEGG   Shigella sonnei Ss046: SSON_1146
Entry
SSON_1146         CDS       T00274                                 
Symbol
ycfD
Name
(GenBank) conserved hypothetical protein
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
ssn  Shigella sonnei Ss046
Brite
KEGG Orthology (KO) [BR:ssn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ssn03009]
    SSON_1146 (ycfD)
Enzymes [BR:ssn01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     SSON_1146 (ycfD)
Ribosome biogenesis [BR:ssn03009]
 Prokaryotic type
  ribosomal protein modification factors
   SSON_1146 (ycfD)
SSDB
Motif
Pfam: JmjC_2 ROXA-like_wH Cupin_1 Cupin_2 AraC_binding Tup_N
Other DBs
NCBI-ProteinID: AAZ87871
ShiBASE_China: SSO1146
UniProt: Q3Z2Z1
LinkDB
Position
complement(1227143..1228273)
AA seq 376 aa
MLNMEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQ
DGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSV
PGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLLQVDPFEAIIDEELEPGD
ILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRA
HPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDAL
KQGDVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFL
AMLAALVNSGYWFFEG
NT seq 1131 nt   +upstreamnt  +downstreamnt
atgcttaacatggaataccaactcactcttaactggcccgattttcttgaacgtcactgg
cagaaacgcccggtggtgttaaaacgcggctttaataattttattgacccgatctctcca
gacgagttggcgggtctggcgatggaaagcgaagttgacagtcgactggtcagtcaccag
gatggcaaatggcaggtcagccacggcccgttcgaaagctacgatcatctcggtgaaacc
aactggtcattactggtacaggcagtgaaccactggcatgagccgaccgccgcgctgatg
cgaccgttccgtgaactaccggactggcgtattgatgatctgatgatttctttttctgta
cctggcggcggcgtcggcccgcatctcgatcagtacgacgtgtttatcattcagggtacc
ggacgtcgtcgctggcgagtgggcgaaaagctgcaaatgaaacagcactgcccacatccg
gatctgttacaggtcgatccgttcgaagccatcatcgatgaagagctggagcctggtgat
attctttatattccgccaggattcccgcatgaaggctacgcgctggaaaatgcgatgaac
tattccgtgggctttcgcgcgccaaatacgcgggaactgattagtggatttgccgattat
gtgctgcaacgtgaactgggcggcaactactacagcgatcctgatgttccacctcgcgct
catcctgcggatgttctgcctcaagagatggataaactgcgtgagatgatgctcgaattg
atcaaccagccggaacactttaagcaatggtttggcgagtttatatcccagtcacgtcat
gaactggatatcgcgccgccagaaccgccttatcagccagatgaaatctacgatgcgctg
aaacaaggtgatgtgctggtgcgcctgggtggtctgcgcgtattgcgcattggcgacgac
gtgtatgccaatggtgagaagatcgattccccgcaccgtccggcactggatgcactcgcc
agcaacattgcgctgactgcggagaattttggcgatgcgctggaagatccgtcattcctc
gcgatgctcgcggcgctggtcaatagcgggtattggttcttcgaagggtaa

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