Streptococcus sp. VT 162: V470_04420
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Entry
V470_04420 CDS
T03287
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stv
Streptococcus sp. VT 162
Pathway
stv03030
DNA replication
stv03410
Base excision repair
stv03420
Nucleotide excision repair
stv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V470_04420 (ligA)
03410 Base excision repair
V470_04420 (ligA)
03420 Nucleotide excision repair
V470_04420 (ligA)
03430 Mismatch repair
V470_04420 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stv03032
]
V470_04420 (ligA)
03400 DNA repair and recombination proteins [BR:
stv03400
]
V470_04420 (ligA)
Enzymes [BR:
stv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V470_04420 (ligA)
DNA replication proteins [BR:
stv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V470_04420 (ligA)
DNA repair and recombination proteins [BR:
stv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V470_04420 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V470_04420 (ligA)
MMR (mismatch excision repair)
DNA ligase
V470_04420 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V470_04420 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
AHZ47678
LinkDB
All DBs
Position
913280..915238
Genome browser
AA seq
652 aa
AA seq
DB search
MNERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG
GKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPHPTYICELKIDGLSISLTYE
KGILVVGATRGDGSIGENITENLKRVKNIPLTLPEELDITVRGECYMPRASFDQVNQARQ
ENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTRDSQEKVLEHLEQLGFV
VNPKRILAKSIDEIWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAIA
YKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVESKRVSEEKLDIPTNCPSCDSQLLHFEDEVALRCINPRCPA
QIMEGLIHFTSRDAMNITGLGPSIVEKLFAANLVKDVADIYRLKEDDFLLLEGVKEKSAS
KLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGS
VIAQSLQAYFATEGSNILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSE
AKNKLESLGAKVTGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaagaatgaatgagttagttgccttacttaaccgctatgcgaccgagtactat
acgagtgacaatccctcggtttcagatagcgagtatgatcgcctctaccgagagttggtc
gaattggaagctgcctatccagatcaagttttagcggacagtccgacccatcgtgttggt
ggtaaggttttagatggttttgaaaaatacagtcatcagtatcctctatacagtttgcag
gatgctttttcacgtgaagagttagaagcttttgatgcgcgtgttcgaaaggaattaccc
cacccgacctatatttgtgagctgaaaatcgatggtttgtctatctcgctgacgtatgaa
aaggggattttggttgtcggtgccactcgtggtgatggttctattggagagaatatcact
gaaaatctcaagcgtgtcaagaacattcctttgaccttgccagaagaacttgatatcact
gttcgtggagagtgttacatgccacgcgcttcatttgaccaggtcaaccaagctcgccaa
gaaaatggagagcctgaatttgctaatcctcgtaacgcagctgcaggaaccctccgtcag
ctggatacagcagtagtggccaaacgcaatcttgcgactttcctctatcaagaagccagc
ccttctactcgtgatagtcaagaaaaagtcttggagcatcttgaacagcttggttttgta
gttaatcctaaacgaatattggctaaaagtatagatgagatatgggatttcatccaagaa
gtaggacaagaacgggagaaacttccttacgatattgatggagtggtcatcaaggtcaac
gacctagcaggtcaagaagaactcggctttactgttaaagcgcccaagtgggcaatcgcc
tataaatttcccgctgaagaaaaagaagcccagctcctttcagttgactggacagtaggt
cgtacgggtgttgtgactccgactgccaatctaacacctgttcagcttgctgggacaact
gttagccgtgcaacattgcataatgtagattatatcgctgaaaaggatatccgaaaagat
gatacggtaatcgtttataaggctggagatatcatccctgctgttttgcgtgttgtagag
tctaaacgtgtttctgaagaaaaactagatattccgactaactgtccgagctgtgacagt
cagttgcttcattttgaagatgaagtggctcttcgttgtatcaatcctcgttgtcctgca
caaatcatggaaggcttgattcactttacctctcgagacgccatgaatattacaggactt
ggtccatctattgttgaaaagctttttgctgccaatttagtcaaggatgtggcagatatt
taccgtttgaaagaagatgatttcctccttttagaaggtgtcaaggaaaagtctgcttct
aaactgtatcaggccattcaagcatccaaggaaaactctgctgaaaagctcttgtttggt
ctgggaattcgccatgtcggaagcaaggctagccaactcttgctccaacatttccactct
attgaaaatctagcccaagctgatcctgaggaagtagcaagtatcgagagcttgggtagt
gtgattgcacaaagccttcaggcttattttgctacagaagggtcgaatattctcttagac
gagttgaaagaagctggagtcaatctggactacaaaggacagacagtagtagcggatgcg
gccttgtcaggtttgaccgttgtattaactggaaaattggaacgtctcacacgctcagaa
gccaaaaataaactcgaaagcctcggtgccaaggtcacaggcagtgtatctaagaaaacg
aatcttgtagtagcaggagcagatgcaggaagcaagctccaaaaagcacaagaacttggt
atcgaagttcgagatgaggcctggctagaaagtttgtaa
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