Synechococcus sp. WH 7803: SynWH7803_2428
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Entry
SynWH7803_2428 CDS
T00524
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
syx
Synechococcus sp. WH 7803
Pathway
syx03030
DNA replication
syx03410
Base excision repair
syx03420
Nucleotide excision repair
syx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SynWH7803_2428 (ligA)
03410 Base excision repair
SynWH7803_2428 (ligA)
03420 Nucleotide excision repair
SynWH7803_2428 (ligA)
03430 Mismatch repair
SynWH7803_2428 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syx03032
]
SynWH7803_2428 (ligA)
03400 DNA repair and recombination proteins [BR:
syx03400
]
SynWH7803_2428 (ligA)
Enzymes [BR:
syx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SynWH7803_2428 (ligA)
DNA replication proteins [BR:
syx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SynWH7803_2428 (ligA)
DNA repair and recombination proteins [BR:
syx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SynWH7803_2428 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SynWH7803_2428 (ligA)
MMR (mismatch excision repair)
DNA ligase
SynWH7803_2428 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SynWH7803_2428 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
DUF2894
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
CAK24854
CyanoBase:
SynWH7803_2428
UniProt:
A5GPI9
LinkDB
All DBs
Position
2258235..2260331
Genome browser
AA seq
698 aa
AA seq
DB search
MSIPQGLQERAAELRQLLNRAAHAYYVLDAPDLEDSVYDRLYRELLDLEAAHPELVEADS
PTQRVGGSPAEGFRSVTHRIPLFSLDNAFSAEELRGWYTRLLKVLDREPPSGSPLPALAM
VGELKIDGNALALSYDNGVLVRAATRGDGDQGEDITANVRTIASIPLRLHLDPPPAWVEV
RGEALIPDNTFAAINSERAARDEPLFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLP
EDWSGERPTSQWESLRWLEDAGFRVNPNAALLPDVDSVEQFFGDWDSRRHDLNYATDGVV
VKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSRLLKLTCQVGRTGVVTPVAEFEPVSL
AGTSVSRATLHNADRLQELDLHSGDTIIVRKAGEIIPEVLRVLPELRPEGALPLELPQQC
PSCGSDLVRESGEAATRCVNSSCPAILSGALRHWVSKGALDVDGLGSKLIEQLVERGLVR
SIADLYRLDTALLTSLERMGEKSAGNLVAALAQSRTQPWSRQLYGLGIHHVGEVNAKALA
SAFADAHSLADAAVQRPEAITDLHGIGPEIAQSLQQWFNTSANQDLLQQLRAVGLTLAAS
DQERQALADRNNGKGHLNGQTFVLTGTLPSLSRSQAQALIEGAGGKVSGSVSKKTSFVVA
GDEAGSKLDKANTLGVSVLDEAALMLLIQNSADTIHLL
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcccgcagggtttgcaggagcgcgctgccgaactgaggcagctcctcaacaga
gccgctcacgcctactacgtgctcgatgctcccgaccttgaggattctgtttacgacagg
ctgtaccgagaactgctcgacctcgaagcagcgcatccagagctggttgaagccgacagt
cccacccaacgggtcggtggctctccggccgaaggcttccgcagtgtcacccaccgcatc
cccctgttcagcctcgacaatgccttcagcgctgaagagctgaggggctggtacacccgg
ctgctcaaggtgctcgaccgtgagcccccctcgggatcccccctgccggccctggcgatg
gtgggagaactgaaaattgatggcaatgccctggcgctgagctacgacaacggcgtgttg
gtgcgtgcggcaacccggggtgatggcgatcaaggggaagacatcaccgccaacgtgcgc
accattgcctccattcctctgcgcctgcacctcgaccccccacccgcctgggtggaggtg
cgcggcgaagccctgattcccgacaacacctttgccgccattaatagtgagcgggctgca
cgcgacgagcccctgttcgccaatccccgcaatgcctgcgccggaaccctgcgacagctg
gacccgaaggtggtggccgccaggcgcctcgacttctttgcctacacccttcacctcccc
gaggactggtcgggggaacgccccaccagccaatgggagagcctgcgctggttggaggat
gcaggtttccgcgtgaaccccaacgccgcgctgctccccgatgttgactcggttgagcag
tttttcggcgactgggacagccggcgccacgatctcaattacgccaccgatggggtggtg
gtgaagctcaacgacctgcgcctgcaggacgctgctggcttcacccagaaagcaccgcgc
tgggccatcgctctcaaataccccgccgaggaagcgcccagccgcctgctcaaactcacc
tgtcaggtgggccgcaccggcgtggtcacacccgtcgccgaattcgaaccggtctctctg
gcgggcacgagcgtcagtcgcgccaccctgcacaacgccgatcgtctgcaggagcttgat
ctgcacagcggcgacacgatcattgtgcgcaaggcaggggagatcatccctgaagtgctg
cgggttctccccgaactgcgtccggagggtgccctgcccctggagctgccgcagcagtgc
ccctcctgcggctcggatctggtgcgcgaaagcggtgaagccgccacacgctgtgtgaac
agcagttgtcccgccatcctgagcggggccctgcgccactgggtgagcaagggtgcgctg
gatgtggatggcctcggcagcaagctgattgaacaactggttgagcgaggccttgtgcgc
tcgatcgccgacctctatcgcctcgacaccgccctgctcacaagcctggagcgcatgggt
gaaaaaagtgccggcaatttggtggccgctttggcccaatcccgaacgcagccctggtcg
cgccagctctacggcctggggatccatcacgttggcgaggtgaatgccaaagccctggcc
tcggcctttgccgacgcccacagccttgctgacgcagccgtgcaacggccggaggcgatc
accgatttgcacggcatcggtccggagatcgcccagagcctgcagcagtggttcaacacc
tcagccaaccaggatctacttcagcagctgcgcgcggtgggcctcacgctggcggcctcg
gatcaggagcgtcaggccctggcagatcgcaacaacggcaaggggcacctcaacggccag
accttcgtgctcaccggcaccttgccctcgctctcccggtctcaggcccaggccttgatc
gaaggagcagggggcaaggtgagtggatcggtgagcaagaaaaccagtttcgtggtggct
ggcgacgaagccggaagcaaactagacaaggccaacaccctcggcgtcagcgtgctcgat
gaagcagcgctgatgctcttgatccaaaacagcgccgacaccatccatctgctttag
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