Takifugu flavidus (sansaifugu): 130517034
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Entry
130517034 CDS
T09160
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
130517034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfs03000
]
130517034
04121 Ubiquitin system [BR:
tfs04121
]
130517034
03036 Chromosome and associated proteins [BR:
tfs03036
]
130517034
Enzymes [BR:
tfs01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
130517034
Transcription factors [BR:
tfs03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
130517034
Ubiquitin system [BR:
tfs04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
130517034
Chromosome and associated proteins [BR:
tfs03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
130517034
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
130517034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
Cupin_8
LRR_4
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
130517034
NCBI-ProteinID:
XP_056874583
LinkDB
All DBs
Position
20:634404..649327
Genome browser
AA seq
1382 aa
AA seq
DB search
MAQAVEACAGSRRRLRSICRRMYDENDDSSDVEEIVNIRGFSVEEKLVGDGYGAKYVQFL
EGRDFSYEYVQREALRVPLIFKEKDGLGIRMPDPEFSISEIKGLVGSRRSVDVMEVSTQK
GTEMSMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLIKRPTVVDQVDWVDNMWPPNL
KHSQTEATNLISEMKYPKVQRYCLMSVKGCYTDFHIDFGGTSVWYHVFKGCKVFWLVPPT
PHNLALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGG
NILHSFNIPMQLTIHEIENRTKVHSKFRFPFYYEMCWYVLERYLNCLTRRSYLSQEFRKE
PVVVADIETKTGSPFSDSRSQDTNEDSCETAQVRDGLCDKPDGFAQDGPCSPDSRRVQNL
KTALSVDSEDSCNPGSTSLDFIQTPLDSPASEPTSRWTHLTGFELSGLRMLVEKLESLPE
NKKCIPEGIENPQALLEDVKAVLKEHADDDPRSAVTGVPVVYRPKKLSKPRPPNRPKSKM
AASPASAVKLSANRGTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCI
MRQCIAPVLPHTAVCLICGEAGKEDTIEDEEEKFHLMLMECSICNEIIHPNCLKVKDSSG
VVNDELPNCWECPKCNQAGKTGKQKRGPGFKYASNLPGSLLKEPRLNRDTREEPDVPMAA
PATVTALNTTCAVKRKAERDDCPKRKEEEPPKKRPLLPSLDAGPRPRLEDNPLRKKRNLF
DTNEEPIMKKKKKLSKLDDSLAQKLLRQIKTENSYSDEEDEQEDHDEDGFPSEGPRVKEK
SEREDENEDYEEGRREATVEVESKVLLSPLLRTSAAREKEQSSSNSPRAGPSSDSGDPQE
RNSAHPKARHQRKRLTAKDPSKEFNQDATRTEDCLSNQNHSPVKKEDGSVNHNRRPLKAE
DSLTNQNRKSLKSGDPNAHPSRRAVKMEESLTNKNRRPLKTEDSLTNQNHQPVKTEPENI
SDQKAKWNLNNGSSDLGDWLRHKGRDVTEKQHGYSPLGWNRSTPIAPICPRPLPCRSPPK
CIQMERHVIRPPPISPPPDKLPLNSGEAHVMRRETWMAVFGHLTHRDLCVCMRVCRTWNR
WCCDKRLWKLINLNRCKSITPLMLSGIIRRQPAALDLSWTNISKKQLSWLINRLPGLRVL
LLSGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRSKLRN
VEELRLAGLDITDTTLRLIIRYMPSLSKLDLSYCNHVTDQSVNILTAAGTTTRDSLTDIN
LSVCNRVTDQSLTYFKRCGSICHIDLRYCKQVSKEGCEQFVAEMSVSVQFELIEEKLLQK
IS
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggccgtggaagcgtgtgctggatccaggcgcaggctgcgctccatctgccgg
aggatgtacgacgaaaacgacgactcgtcggacgtcgaggagattgtcaacatcagagga
ttcagtgtggaggagaagctggtcggcgacggctacggcgcaaaatatgtccagtttttg
gaggggagagacttctcatatgaatacgtgcaaagagaggcgctcagggtcccgctcatc
tttaaagagaaggacggactcgggatcagaatgcctgatccagaattttcaattagtgaa
atcaaaggcttagttggcagccgccgctctgtggatgttatggaagtgagcactcagaaa
ggcactgaaatgagcatggctcagtttgtccgttattacgagactcctgaggaggagcgg
gacaaactcttcaatgtcatcagcttagaattcagccacactaagctggagaacctcatc
aagcgtcccacagtggtggatcaagtagactgggtggataacatgtggcctcctaatctg
aaacacagccaaacagaagccaccaatctaatctcagagatgaaatatccgaaagtgcaa
aggtattgtctcatgagcgtaaaaggctgctacacagacttccacattgattttggggga
acatctgtttggtatcatgtgtttaaaggatgcaaagtgttttggctggtgcctcccacc
cctcataacttggccctttacgaggactgggtcctgtcagggaagcagagtgacatcttc
cttggagaccgagctgatggatgccagagagtggagcttaagcaaggatacaccttcttc
atcccatctggctggatccacgccgtttatacgcctgaggacacgctggtgtttggaggc
aacattctgcacagcttcaacattcctatgcagctgaccatccacgagatagagaacagg
accaaggttcattccaagttccgtttccccttctactatgagatgtgctggtacgtcctg
gagaggtacctgaactgtctgaccagacggtcctacctgtctcaggagtttcgtaaagag
cccgtagtagtggcggatattgaaactaaaacggggagtcctttctctgattcccggagt
caggacaccaacgaggactcgtgtgagaccgctcaggtcagggacggcctctgcgacaag
ccagacggtttcgcccaagacgggccctgctctccggacagccggagggtccagaacctc
aaaactgccttatcagtggactcggaggacagctgtaatcccggatccacctctttagat
ttcatccaaacgcccttggactctcctgcctcggagcccacgagcaggtggactcacttg
acgggatttgagctgagtggcctcaggatgctggtggagaagctggagtcgcttcccgaa
aacaagaaatgcatcccggaagggatagaaaatcctcaggctctgctggaagacgtgaag
gcggttctgaaggaacacgctgatgatgaccccagatcggccgtcaccggagttcctgtg
gtttaccggcccaagaagctctcaaagccccgacctcccaaccggcccaaatccaagatg
gccgcctcccctgcatcggcggtcaagctgtccgccaaccggggaacgtccggcgccagg
aggcgaagaacccgctgtcgcaagtgtgaagcgtgcctgcggacggagtgcggcgagtgc
cacttctgcaaggacatgaagaagttcggcgggccgggccgcatgaagcagtcgtgcatc
atgaggcagtgcatcgcaccggtcctgcctcacacagcagtgtgtctcatctgtggggag
gccggcaaagaagacaccattgaggatgaggaggaaaagtttcatctcatgctcatggag
tgctccatctgcaatgagatcattcatcctaattgtctgaaggtcaaagattcgagcggg
gtcgtcaacgatgagctgcccaactgctgggagtgcccgaagtgcaaccaagcagggaag
actggcaaacaaaaacgggggccagggttcaagtatgcgtccaacctgccgggctcccta
ctgaaggaaccgcggctcaaccgggacacgagagaggagcccgatgttccgatggcggct
ccagccaccgtcactgccttgaacaccacatgtgctgtgaagagaaaggccgagcgggac
gattgccccaagaggaaagaagaggaacccccaaagaaacgtcccttgctgccgtctctg
gacgcagggccccgaccgcggctggaggacaacccgctgaggaaaaagaggaaccttttt
gacaccaatgaggagcccatcatgaaaaagaagaagaaattgtcaaaactggacgactcc
ttggctcaaaagctgttgaggcaaatcaaaacggaaaacagctacagcgacgaagaggac
gagcaggaagatcacgacgaagacgggtttccctcagaggggcctcgcgttaaagagaag
agcgagcgtgaagacgagaatgaagattacgaagaggggagaagggaggcgacggtagag
gtcgaatccaaggttctgttaagtcccctgctgagaacatctgcagccagagagaaggaa
cagtcctcctccaactcccccagagccgggcccagcagcgactcaggagaccctcaggag
aggaactctgctcacccaaaggctcgccatcagcgaaaacgcctaaccgccaaagacccg
agcaaagagttcaaccaggatgctaccaggacggaagactgtctgtccaaccagaaccac
agtccagtgaagaaagaggacggctcggtcaatcacaacagacggcccctcaaggccgaa
gactctctgaccaaccagaaccgcaagtcgctaaaatcgggggatccaaacgcccatccg
agccgcagggccgtcaagatggaagaaagcctgaccaataaaaaccggcgtcccttgaaa
acggaggacagcctcaccaatcagaaccaccagcctgtcaaaaccgagcccgagaacatc
agcgaccagaaggcgaagtggaacctcaacaacggcagcagcgacctcggcgactggctg
cggcacaaaggccgcgacgtgaccgagaagcagcacggctactcgccgctcggctggaac
agaagcacgccgatcgccccgatctgtccccgcccgctcccctgccggtcgccgcccaaa
tgcatccaaatggagcgccacgtgatccggcctccgccgatcagccccccgccggacaaa
ctgccgctgaacagcggcgaggcccacgtgatgcggcgggagacgtggatggcggtcttc
ggtcacctgacccacagagatctgtgcgtgtgcatgcgtgtctgcaggacgtggaaccga
tggtgctgtgacaagaggctctggaagctcatcaatctgaaccgctgtaagtccatcacg
cccctcatgctgagcggtatcatccggaggcagccggccgctctggacctcagctggacc
aacatctccaagaaacagctgagctggctcatcaacagacttccaggtttgcgggttctg
ctgctgtctggatgctcctgggcagctgtgtccgctctctgcacctccagttgtcctctc
ctaagaaccctggacgtccaatgggtggagggtctgaaagacgcccagatgagggacctg
ctttcgcctcctacagacaacaggccaggtcagctcgataacagaagcaaactgcggaac
gtggaggagctgcggctggccggcctggacatcacggacacgactctgcgcctcatcata
cgctacatgccctccttgtctaaactggacctcagctactgcaaccacgtcaccgaccag
tcggtcaacatcctgaccgctgcggggaccaccaccagggactcgctcaccgacatcaac
ctgtcagtctgtaacagggtcacagaccagtcgctgacctatttcaagcgctgcggaagc
atctgtcacatcgacttgcgatactgcaaacaggtgagcaaggaaggctgcgagcagttc
gtggccgagatgtctgtgagcgtgcagttcgaactgatcgaggagaagctgctgcagaag
atcagttag
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integrated database retrieval system
