Thermus sp. CCB_US3_UF1: TCCBUS3UF1_15930
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Entry
TCCBUS3UF1_15930 CDS
T01866
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thc
Thermus sp. CCB_US3_UF1
Pathway
thc03030
DNA replication
thc03410
Base excision repair
thc03420
Nucleotide excision repair
thc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TCCBUS3UF1_15930
03410 Base excision repair
TCCBUS3UF1_15930
03420 Nucleotide excision repair
TCCBUS3UF1_15930
03430 Mismatch repair
TCCBUS3UF1_15930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thc03032
]
TCCBUS3UF1_15930
03400 DNA repair and recombination proteins [BR:
thc03400
]
TCCBUS3UF1_15930
Enzymes [BR:
thc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TCCBUS3UF1_15930
DNA replication proteins [BR:
thc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TCCBUS3UF1_15930
DNA repair and recombination proteins [BR:
thc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TCCBUS3UF1_15930
NER (nucleotide excision repair)
GGR (global genome repair) factors
TCCBUS3UF1_15930
MMR (mismatch excision repair)
DNA ligase
TCCBUS3UF1_15930
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TCCBUS3UF1_15930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH
RNA_pol_A_CTD
BRCT_2
OrfB_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AEV16634
UniProt:
G8N8X7
LinkDB
All DBs
Position
complement(1590418..1592490)
Genome browser
AA seq
690 aa
AA seq
DB search
MTLEAARKRVNELRDLIRYHNYRYYVLDDPEISDAEYDRLLRELKELEARFPELKTPDSP
TEQVGAGPLEATFRPVRHPTRMYSLDNAFSLEEVKAFEERIARALGREGPFLYAVEHKVD
GLSVNLYYEEGVLVYGATRGDGETGEEVTQNLLTLPTLPRRLKGVPERLEVRGEVYMPLE
AFLRLNEELEEKGEKVFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLGLEETGLRSQ
LELLHWLREKGFPVEHGFTRALGAEGVEEVYQDWLQGRRALPFEADGVVVKLDDLSLWRE
LGYTARSPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFLEGSEVSRVTLH
NESYIEELDIRVGDWVLLHKAGGVIPEVLRVLKERRTGEEKPILWPEVCPECGHRLQKEG
KVHRCPNPLCPAKRFEALRHYASRKAMDIGGLGEKLIEKLLERGLVKDVADLYRLRKEDL
VGLERMGEKSAQNLLRQIEESKGRGLERLLYALGLPGVGEVLARNLAARFRTMDRLLEAS
LEELMEVEEVGELTARGILETLRDPAFLDLVRRLKEAGVVMEAKEGGGEALKGLTFVLTG
ELSQPREEVKALLRRLGAKVTDSVSRKTSYLVVGEGPGSKLEKARALGVPILTEAELFRL
LEERAGKALALGSGTEDLLQGLFEPGAGKP
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcgaggccgcccgcaagcgggtcaatgagctgcgcgacctcatccgctaccac
aactaccgctactacgtcctggatgacccagagatctccgacgcggagtacgaccgcctg
ctacgggagcttaaggagctggaggcgcgtttccccgagctcaaaacccccgactccccc
acggagcaggtgggggcagggcctttggaggccaccttccgcccggtccgccaccccacc
cggatgtactccctggacaacgccttcagcctggaggaggtcaaggcctttgaggagcgc
atcgcccgggccctggggcgggaggggcctttcctctacgcggtggagcacaaggtggac
gggctctccgtgaacctctattacgaggaaggggttctggtctacggggccacccggggg
gatggggagacgggggaggaggtgacgcaaaacctcctcaccctccccaccctgccgcgg
cggcttaagggggtgccggagcgcctggaggtccggggggaggtctacatgcccctcgag
gccttcctccgcctcaacgaggagctggaggaaaagggggagaaggtcttcaagaacccc
aggaacgccgctgctggctccctgcggcaaaaggacccgcgggtcacggcccgaaggggc
ctgagggccaccttctatgccctgggcctgggcctggaggagacgggcctgcgctcgcag
ctggagcttctccattggcttagggaaaaaggctttcccgtggagcacggcttcacccgc
gccctgggggcggaaggggtggaggaggtctaccaggactggctccaagggcggcgcgcc
ctgccctttgaggccgatggggtggtggtgaagctggacgacctctccctgtggcgggag
ctcggctacaccgcccgctctccccgctttgccatcgcgtataagttccccgcggaggaa
aaggaaacccggcttctccaggtggtcttccaggtggggcgcacgggccgcgtgaccccg
gtggggatcctggagccggttttcctggaagggagcgaggtgagccgggtcaccctgcac
aacgaaagctacattgaggagctggacatccgcgtgggggactgggttttgctgcacaag
gcgggcggggtgatccccgaggtcctaagggtcctcaaggaacggcgcaccggggaggag
aagcccatcctttggccggaggtctgtccggagtgcggccaccgcctgcagaaggagggg
aaggtccaccgctgccccaaccccttgtgccccgccaagcgctttgaggccctccgccac
tacgcttcccgcaaggccatggacatcggcggcctgggggagaagctcatagagaagctc
ctggaaaggggcctggtcaaggacgtggccgacctctaccgcctaaggaaggaggacctg
gtgggcctggagcgcatgggggagaagagcgcgcaaaacctcctccgccagatcgaggag
agcaaggggcggggcctggaacgcctcctctacgccctggggcttcccggggtgggggag
gtgctggcccgcaacctggcggcccgcttccgcacgatggaccggctcctcgaggcctcc
ttggaggagcttatggaggtggaggaggtgggggagctcaccgccaggggcatcctggaa
accctccgcgatcccgcctttttggacctggtgcgccgcctgaaggaggccggggtggtc
atggaggccaaggagggcggcggggaggccttgaagggcctgaccttcgtcctcaccggg
gagctttcccaaccccgggaggaggtgaaggccctcctgcgccgcctgggggccaaggtg
acggactccgtgagccgcaagaccagctacctggtggtgggggaggggcccgggagcaag
ctggaaaaggcccgggccctgggggtgcccatccttacggaggccgagcttttccgcctc
ctggaggagcgcgcaggcaaagccctggccctaggctccgggaccgaagaccttctccag
ggcctctttgagcctggagccggaaagccctag
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