Candidatus Thiothrix singaporensis: HZT40_06070
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Entry
HZT40_06070 CDS
T06729
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
this
Candidatus Thiothrix singaporensis
Pathway
this03030
DNA replication
this03410
Base excision repair
this03420
Nucleotide excision repair
this03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
this00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HZT40_06070 (ligA)
03410 Base excision repair
HZT40_06070 (ligA)
03420 Nucleotide excision repair
HZT40_06070 (ligA)
03430 Mismatch repair
HZT40_06070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
this03032
]
HZT40_06070 (ligA)
03400 DNA repair and recombination proteins [BR:
this03400
]
HZT40_06070 (ligA)
Enzymes [BR:
this01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HZT40_06070 (ligA)
DNA replication proteins [BR:
this03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HZT40_06070 (ligA)
DNA repair and recombination proteins [BR:
this03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HZT40_06070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZT40_06070 (ligA)
MMR (mismatch excision repair)
DNA ligase
HZT40_06070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HZT40_06070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QLQ31241
UniProt:
A0A7L6AQ64
LinkDB
All DBs
Position
1200439..1202454
Genome browser
AA seq
671 aa
AA seq
DB search
MKEPQQQIEKLREQLRYHNHRYYVLDDPEIPDAEYDRLFRELQALEAEHPELVTPDSPTQ
RVGGTPLSEFGEVRHAIPMLSLGNVFSDEELLAFDKRIHDRLKSDAEIEFAAEPKLDGLA
ISLLYENGVFTRAATRGDGETGEDVTQNVRTIEAIPLRLMGEGWPQVLEVRGEIYMPKAG
FNALNERLRNEGRKTFVNPRNAAAGSLRQLDARITAQRPLTIFCYAVGLVEGGTMPDTHY
AMLQQLAVWGFRVCPDIRLVQGAQGCLEYYRNTGARRESLPYDIDGVVYKVNSIALQQEL
GFVSRAPRWATAHKFPAQEEITVLEDVEFRVGRTGALTPVARLKPVFVGGVTVSNATLHN
MDEIERKDVRIGDSVIVRRAGDVIPEVARVILERRPPDARLIEMPTHCPVCGSDVQRPEG
EAVFRCTGGLYCPAQVKEAIKHFASRKAMNIDGLGDKLVEQFFEQGLIRHVDDLYRLAEK
QEQIAALERMGEKSVVNLVNALEKSKSTTLERFIFGLGIREVGEATAKALARHFGSLEAL
QAANEETLKLVPDVXPVVAANIAQFFQEAHNRDTIQHLRELGVHWQDYEAKPLEALPLAG
KTYVITGTLSRSRDDIKADLEALGAKVAGSVSKKTTALIAGENAGSKLDKAQSFGVDVIG
EDGLSALLGHS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagccgcaacaacaaattgaaaagcttagagagcagctgcgttatcacaaccat
cgctattatgtgctggacgacccggaaatcccggatgccgaatacgaccgtttgtttcgt
gagttacaagcgttggaagcggaacacccggaactggtcacacccgattcccccacccag
cgagttggtggcacgcctctcagtgaatttggcgaagtccgccacgcgattcctatgctt
tcactgggcaatgtgttcagtgacgaagaattattggccttcgacaagcgcattcacgat
cgtctgaaatcagatgctgaaatcgagttcgctgccgaacccaagctggatggactggcc
atcagtctgctgtacgaaaacggtgtatttacccgtgcggctacccgtggtgatggtgaa
accggtgaagatgtgacgcaaaacgtgcgtaccattgaagcgattcccctgcgcctgatg
ggggaaggctggccacaggtgttggaagtccgtggcgaaatctacatgcccaaggccggt
ttcaatgccctgaatgaacgcttgcgcaatgaggggcgnaaaaccttcgtcaacccacgt
aacgcagctgctggcagtttacgccagttggatgcacgtattacggcgcagcgcccgctg
acgatcttctgttatgcggttggcctggtggaaggnggaacaatgccggatacccattac
gccatgttgcaacaactggcggtgtggggatttcgtgtctgccctgacatccgtctggtg
cagggagcgcaaggctgcctggaatactaccgtaatacgggtgctcggcgggaaagtctg
ccttatgacatcgatggagtggtgtacaaggtcaattccattgctttgcaacaggaactc
ggctttgtcagtcgggcaccgcgctgggcgactgcccacaagtttccggctcaggaagaa
atcaccgtgctggaagatgtggagttccgngtagggcgcacaggcgcgctgaccccggtt
gcccgtcttaaaccggtatttgtcggcggtgttacggtcagtaatgccactttgcacaat
atggatgaaatcgaacgcaaggatgtgcgtattggcgactccgttattgtccggcgggca
ggggatgtgattcctgaagttgctcgtgtcattctggaacgccgcccgcctgatgctcgc
ctgattgaaatgccgacgcactgtccggtgtgtggttcggatgtgcaacgcccggaaggt
gaagctgtatttcgctgtaccggcggtttgtattgcccggctcaggtcaaagaagccatc
aagcattttgcctcgcgcaaagccatgaacatcgacggcctgggcgataaattggtggag
cagtttttcgagcagggactgattcgccatgttgacgacttataccgcctggctgagaag
caggagcagattgctgctttggaacgtatgggcgaaaagtccgttgtgaatctggtcaat
gcactggagaaaagcaaatccaccactctggagcgctttattttcggcctcggtattcgt
gaagttggcgaggccaccgccaaagctctggctcggcattttggttctctggaagccttg
caggcggccaatgaggaaaccctgaaactggttcctgatgtctanccggtggttgctgcc
aatattgcgcaatttttccaggaagcacataaccgcgatactatccagcatctgcgtgaa
cttggcgtgcactggcaggattatgaagccaagccgctggaggctttgccactggcgggt
aaaacctatgtcattaccggcacactcagccgttcgcgcgacgatatcaaagctgacttg
gaagctttaggggcaaaagtggcaggcagtgtttccaaaaagactacagcgctgattgca
ggcgaaaatgcaggctctaaactcgacaaggcgcaaagttttggggtggacgtgataggt
gaagacgggttatctgctttgcttggccattcgtga
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integrated database retrieval system
