Trachemys scripta elegans (red-eared slider): 117871755
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Entry
117871755 CDS
T07347
Symbol
NPC1L1
Name
(RefSeq) NPC1-like intracellular cholesterol transporter 1
KO
K14461
Niemann-Pick C1-like protein 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tst02000
]
117871755 (NPC1L1)
Transporters [BR:
tst02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
117871755 (NPC1L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
IML1
DUF5714
Motif
Other DBs
NCBI-GeneID:
117871755
NCBI-ProteinID:
XP_034615410
LinkDB
All DBs
Position
2:complement(140767763..140793615)
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AA seq
1324 aa
AA seq
DB search
MLGRFPLTLVLLSATLGLAAAALTETHQAGYCSFYGECGRNPEINVSLLWSQVPCLSNTP
ARLLKDATLSKLKEVCPRLYTGENATYACCSYTQLVALQLSLAISQAVLTRCPACSENFA
NIYCQNICSPNQSLFTNVTRFFNRSTGLGRQVGVLEYQCFYNQSFADQSYDSCKGVRIPA
TGGYAIAAMCGKYGATLCNSQRWLDFQGDSSNGLAPLDIDFQLVPANGAIGEGIVPLNSK
TWSCGKAVSADGEPCSCLDCAESCPQIPAPTPQPPPFKVGSLDGVLFVCCLLFCLLTVLF
GAFLVWRCVSRSRQASGEGRQRQRDQLTRSEKLSQATHRVLGEMFRRWGTMVASHPVSVI
LVSAVVVVGLSCGMVFIQLTTDPVELWSSPDSQARQEKDFYDQNFGPFFRTNQVILTAKG
RPSYTYDSLLLGRKNFSGILSMAVLLDLLELQTRLQEIEVWSEKEGRNVTLKDVCYAPLN
PNNASATDCCVNSLVQYFQNNRTRLEMTASQTQGSQTGMVDWKDHFLYCVNSPLSFKDIT
NLQLSCMADYGAPVFPFLAVGGYTGEDYSEAQALILTFSLNNYPRSDPRYAWVLLWEQRF
LQVVREFQRAHAHTYTIAYMAERSLEDEINRTTAEDIPIFAISYLVIFLYIALALGEYSS
CRRILVDSKVTLGLGGILVVLGAVFSSMGFYAYVGLPSSLVIIEVVPFLVLAVGADNIFI
FVLEYQRSVREPGERREQHIGRVLGTVAPSMLLCSFSEATCFFLGSLTRMPAVRTFALNA
ALAVLFDFLLQMSMFVALVSLDARRQEAARLDLCCCHRLNKAGCPARSEGLLRPFMRRIY
TPVLLNRAVRALVMLLFLFMFCAGIYLALQVPVGLNQELAMPKDSYMVQYFQYLNQYFMV
GLPTYFVTTGGYNFSTRPGMNGVCSSTGCDNNSLTQKIQYATKFSNVSYLAIPASSWVDD
FIDWLHPLSRCCRISSEDSQFCPSTNTTASCPLNCMRSLSEVIRPSVEQFNRFLPWFLHD
MPNLNCPKGGLGAYDTAVKLGPDGEIQASRFMAYHTPLTNSQEYTAALRAARALATNITH
SMRRVPGTDPNFRVFPYTVTYVFYEQYLTIVNEGLFNLALCLVPTFAVCCVLLGMDLRSG
LINLFTIVMILVDTVGAMTLWDISYNAISLINLVTAVGISVEFVSHLTRAFAVSTQPTRL
ERAKEATINMGSAVFAGVAMTNLPGIVVLAFAKAQLIQIFFFRLNLLITLLGLLHGLVFL
PVLLSYFGARCLRPSHSPAEAPQPELEKRSPEGSLTVRNPSFQDKEEQSKGQGPRDPPVA
SCHL
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atgctgggccgcttcccgctcaccctggtgctgctcagcgccaccctgggcctggctgca
gcggcactgacagaaacccaccaagctgggtactgctccttctacggcgagtgcgggcgg
aaccccgagatcaacgtgagcctgctgtggtcgcaggtgccctgcctctccaacacaccg
gcccggctgctcaaagacgccaccctcagcaagctgaaggaggtgtgcccccggctgtac
acgggcgagaatgccacgtacgcctgctgcagctacactcagctggtggccctgcagctc
agcctggccatctcccaggccgtcttgactcgctgccccgcctgctccgagaacttcgcc
aacatctactgccagaacatctgcagccccaaccagagcctcttcaccaacgtcacccgc
ttcttcaaccgctccaccggcctgggcaggcaggtgggcgtgctggagtaccagtgcttc
tacaaccagagcttcgctgaccagtcctatgactcctgcaagggcgtccggatccccgcc
actggtggctacgccatcgctgccatgtgcggcaagtacggtgccaccctgtgcaacagc
cagcgctggctggacttccagggggacagcagcaacgggctggccccgctggatatcgac
ttccagctggtgcccgccaatggtgccatcggggagggcatcgtgccgctcaacagcaag
acttggagctgcggcaaggccgtcagtgccgacggggagccatgctcctgcctggactgt
gccgaatcctgcccacagatccccgcccccacgccccagcccccgcccttcaaggtgggc
agcctagacggagtcttgtttgtgtgctgcctgctcttctgcctgctgaccgtgctcttc
ggagccttccttgtgtggcgctgcgtctccagatccaggcaggccagcggcgaggggcgg
cagcgccagagggaccagctgacacgctcagagaagctcagccaggccacccaccgcgtc
ctgggggagatgttcaggagatggggcaccatggtggcttcccacccagtctcggtcatc
ttggtctcagccgtggtggtggtggggctctcctgcgggatggtctttatccagctcacc
accgaccccgtggaactctggtcctcgcccgacagccaggcccggcaggagaaggacttc
tatgaccagaactttgggcccttcttcaggaccaaccaggtgatcctcacagccaagggc
cgccccagctacacctacgactccctcctcctaggaaggaagaacttcagcgggatcctc
tccatggctgttctgctggacctgctggagctgcagacgcggctgcaggagatcgaggtc
tggtcggagaaggaaggcaggaatgtgacgctcaaggacgtctgctacgcccccctgaac
cccaacaatgccagcgccactgactgctgcgtcaacagcctggtgcagtatttccagaac
aaccgcacccgcctggagatgacggccagccagacgcaggggagccagacgggcatggtg
gactggaaagaccacttcctctactgcgtcaactcgcctctctccttcaaggacatcacc
aacctgcagctgagctgcatggctgactacggcgcgcccgtcttccccttcctggccgtg
ggtggctacacaggtgaagattattcggaggcccaggcactgatcctcaccttctcactg
aacaactacccgcgcagtgacccgcgctacgcctgggtgctgctgtgggagcagcgcttc
ctgcaggtggtgagggagttccagcgggcccacgcccacacctacaccatcgcctacatg
gccgagcgctccctggaggacgagattaaccgcaccacggccgaggacatccccatcttc
gccatcagctacctggtgatcttcctctacatcgcgctggccctgggcgagtactccagc
tgcaggcgcatcctggtggactccaaggtgacgctgggcctgggcgggatcctggtggtg
ctgggcgccgtgttctcctccatgggcttctacgcctacgtggggctgccctcctccctc
gtcatcattgaggtggttcccttcctcgtgctggctgtgggcgctgacaacatcttcatc
ttcgtgctggaataccagaggtcggtgcgggagccgggcgagaggcgtgagcagcacatc
gggcgggtgctgggcaccgtggcacccagcatgctcttgtgcagcttctccgaggccacc
tgcttcttcctgggctccctgacgcggatgccagcggttcgcacctttgctctcaacgcc
gccctggctgtgctctttgacttcctgctccagatgtccatgttcgtggcgctggtctcc
ctcgacgcccgcaggcaggaggccgcccgcctcgacctctgctgctgccaccgcctgaac
aaggcggggtgcccggcgcggagtgaggggctgctgcgtcccttcatgcggcgcatctac
acccccgtgctgctgaaccgtgctgtcagggccctggtgatgctgcttttcctgttcatg
ttctgcgctgggatctacctggcgctgcaggtgcccgtggggctgaaccaggagctggcg
atgcccaaggactcctacatggtgcaatacttccagtacctgaaccaatacttcatggtg
ggcctgcccacctactttgtcaccaccggcggttacaacttctccaccaggcccggcatg
aacggtgtctgctccagcaccggctgtgacaacaactccctgacccagaagatccagtat
gccacaaagttctccaacgtatcctacctggccatccctgcctcgtcctgggtggatgac
ttcattgactggctccacccgctgtcgagatgctgccgcatcagctccgaggacagccag
ttctgcccgtccaccaacaccaccgccagctgcccgctcaactgcatgaggagcctgagc
gaggtcattcgcccctcggtggagcagttcaaccgcttcctgccctggttcctgcacgac
atgcccaacctcaactgccccaagggggggctgggagcctacgacaccgctgtgaagctg
ggcccagacggcgagatccaggcctcgcggttcatggcctaccacacgcccctcactaac
tcccaggagtacacggccgcgctgcgggcggcacgagcgctggcaacaaacatcacccac
tccatgcggcgggtgccgggcaccgaccccaacttccgggtcttcccttatacggtcacc
tacgtgttctacgagcagtacctcaccatcgtgaacgaggggcttttcaacctggcgctc
tgcctggtgcccaccttcgccgtctgctgtgtgctgctgggcatggacctgcgctcgggc
ctcataaacctgttcaccatcgtcatgatcctggtggacaccgtgggcgccatgacactc
tgggacatcagctacaatgccatctccctcatcaatctggtgacggccgtgggcatctca
gtggagttcgtgtcccatctgacccgtgcctttgccgtcagcactcagcccactcggctg
gagagggccaaggaggccaccatcaacatgggcagcgcggtcttcgcgggcgtggccatg
accaacctgccgggcatcgtggtgctggcattcgccaaggcccagctcatccagatcttc
ttcttccgcctgaacctgcttatcacgctgctgggcctgctgcacggcctggtcttcctg
cctgtgctgctcagctacttcggtgcccgctgcctgcggcccagccacagccccgccgag
gccccgcagccggagctggagaagaggagccctgagggtagtctgaccgtgaggaacccc
agcttccaggacaaggaagagcagagcaagggccaggggcccagagaccccccagtggcc
tcctgccacctctga
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