Virgibacillus sp. NKC19-16: KFZ58_16985
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Entry
KFZ58_16985 CDS
T08697
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vik
Virgibacillus sp. NKC19-16
Pathway
vik03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KFZ58_16985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vik03400
]
KFZ58_16985
Enzymes [BR:
vik01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KFZ58_16985
DNA repair and recombination proteins [BR:
vik03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KFZ58_16985
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UJL46035
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Position
3412672..3414474
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AA seq
600 aa
AA seq
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MDMMKPIASTEKPRGEDWLYEVKYDGFRCVLQWEDGSIRLTSKNNKDLTANFPEIVAFCR
ENEALVKPFLPLQFDGELVVLNNAFQADFASIQKRGRLKNKASIQEAAEFRPASLLVFDL
LQYKGSDCRKDPLVKRKSLISDFSANTEVKGRINFIQTHDDADELGKIIFDYKAEGMIAK
RQTSTYQSEKDHRDWFKIKNWRTIHGFLTHFNPENDYFTVSIYDNDAIKEIGKCKHGLDS
EAFQTLQQIFTTKGEKEREGYSLPPAICASIHTLDLYKEELREPEFDKLLPNMEAAACTL
ERLQLNMAMLPPTVDLTNTDKIFWPDDALTKGDLLIYIREIAPYMIPFLKDRALTIIRSP
DGVKKEHFFQKHLPDYAPSFIDSFNIDDERRIICNGLDSLVWFANHGAVEYHIPFQTVQH
DDPSEIVFDLDPPDRDRFDLAIQAAKIIKALLDDLDLISFVKTSGNKGLQIHIPIPTGSM
TYEETGVFTEAIARTVENAYPNLFTTERMKKNRNGRLYIDYLQHGKDKTLIAPYSPRKTD
DATIAAPLFWEEVKEGLDPGQFTIENAIDRVKRLGCPFGTYFDVGMEQRLERVLSLVRGY
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggatatgatgaagccgatagcaagcacggaaaaaccaaggggcgaggactggttatat
gaagtaaaatatgacggctttcgctgtgtcttgcaatgggaagatggaagtattcgtctt
acgagtaaaaataataaagatttaacagcgaatttcccagagattgtggcattttgccgg
gaaaatgaagcgctggtcaaaccttttcttccgcttcaatttgacggggaactagtcgtt
ttaaacaacgcctttcaagcagactttgcttcgattcaaaaacgaggacgactcaaaaac
aaagcttccattcaggaggcagctgaattcaggcctgcaagcttgctcgtctttgatcta
ttgcaatataaaggatcagattgcaggaaggatcccttggtaaagcgtaaatcgttaatt
tctgatttttcggccaatacagaggtgaaggggcgaatcaatttcatccaaacccatgat
gatgccgatgaattaggcaaaattatttttgactacaaagcggaagggatgattgcgaag
cggcaaacgagcacctatcaatccgaaaaagatcaccgcgattggttcaagataaaaaat
tggcgaacgattcatgggtttcttacccattttaacccggagaatgattatttcactgtc
agtatttacgacaatgatgctataaaggaaataggaaaatgtaaacatggactcgattca
gaagcgtttcaaacgttacaacagatttttaccacaaaaggagaaaaagaacgtgaaggc
tactcgcttccgccagctatttgtgcctcgattcatacacttgatttatataaggaagaa
ctgcgtgagccggaatttgataagctattgccgaatatggaagcagcggcttgtacactt
gaaagactgcagctcaatatggcgatgcttccacctacagtcgacctcacaaacacggat
aaaattttttggccggatgatgctctaacaaagggagatttgcttatttacatacgggaa
atcgcgccatatatgattccctttttaaaagatcgtgctctcactatcattcgttcccct
gatggagtgaagaaagagcatttttttcaaaaacatttaccggattatgcaccttctttt
atagatagttttaatatagatgatgaaaggcgtattatatgtaatggcctggattcactg
gtgtggttcgcgaatcacggtgcggtggaatatcatattccgtttcagacggtacaacat
gatgatcctagcgaaattgtctttgatttagaccctcctgaccgggatagatttgatttg
gctatacaggcagccaagattattaaagccttgcttgatgatttggatctcatttcattt
gttaaaacttccggaaataaaggcctgcaaattcatattccaatcccgacaggaagtatg
acatatgaagaaacaggtgtatttacggaggctattgcccggacggttgaaaatgcttat
ccgaacttgtttacaacagaacgaatgaagaaaaatagaaatggccgtctgtatatcgac
taccttcaacatggaaaagataaaacactaatagcaccctattcccccaggaagacagat
gatgcaaccattgctgctccgctgttttgggaagaggtcaaggaagggctagatccaggg
caatttacaattgaaaatgcgatcgaccgtgtaaagaggttgggttgtccttttggtacg
tactttgatgttggcatggagcagcggttggaaagggtgctttcgcttgtgcgagggtat
taa
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