Xylella fastidiosa Temecula1: PD_1940
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Entry
PD_1940 CDS
T00113
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft03030
DNA replication
xft03410
Base excision repair
xft03420
Nucleotide excision repair
xft03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PD_1940 (ligA)
03410 Base excision repair
PD_1940 (ligA)
03420 Nucleotide excision repair
PD_1940 (ligA)
03430 Mismatch repair
PD_1940 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xft03032
]
PD_1940 (ligA)
03400 DNA repair and recombination proteins [BR:
xft03400
]
PD_1940 (ligA)
Enzymes [BR:
xft01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PD_1940 (ligA)
DNA replication proteins [BR:
xft03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PD_1940 (ligA)
DNA repair and recombination proteins [BR:
xft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PD_1940 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PD_1940 (ligA)
MMR (mismatch excision repair)
DNA ligase
PD_1940 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PD_1940 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Ribosomal_L14e
Motif
Other DBs
NCBI-ProteinID:
AAO29770
UniProt:
Q87A88
LinkDB
All DBs
Position
complement(2279626..2282121)
Genome browser
AA seq
831 aa
AA seq
DB search
MIPLDPAQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDLATPDSP
TQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITARLGETAPGFSAEPKLDGL
AISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTVLEVRGEVYMPRP
DFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGIGEVTDDVAFHRH
SEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGIVYKLDDLSGQHE
MGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQVAGVTVTSVTLH
NADQIARLDVRIGDTVIVRRAGDVIPEVVAVITDSRPPGATAWSMPMACPVCGSEIVRET
GAAVWRCSGELACPAQRKEAIRHFVSRRAMDVEGLGVKCIELLVDAAVVHGVADLYHLSL
DQLLRLRLVTNAQTPTMLLREARDHVTGMRYQQLEEILRTVGVDLSGEGDVPKHWQIDVL
RAQWPDFDWNHKKIATKWAQNLIAAIDRSRQTTLERFLFALGMTHVGETTAKALAHSFGD
LAIIRQLPWPLFKCVPDIGGEVARAIGHFMDQPANQQAIDDLVERGVRITDAHPPTSTLR
DQLTLASLLEHLEIPKITPLRAVQLATLAPTLPLLAEADLDALLQAGVPQPAAQSLTEWF
QSPDNISLARRLQHCCDVLLAQLLSPDRAHTAPLNGQSVVLTGKLASLTREAAATRLESL
GAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLAFLEQYSAQ
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgatccccctggatcctgcccagcgtgccgctgaactgcgtcgtcgtcttcaagaggcc
aactaccactaccacgtcctcgaccaaccacgtattccggatgctgactacgaccgcatg
ttgcgtgaactggacgccctcgaagcgacctatccagacctagcgacgcctgattcaccg
actcagcgtgttggacacaccattgccaccgcattttccgaagtgcgccataccgtcccg
atgctttccctgaacaatgccttcagtgatcccgaagtccttgaattcgtgcgccgtatt
accgcgcgtctgggagaaacagcccctggtttttccgcagaacccaaactggatggcttg
gcgatcagcctccgctatcagaacggcatctttatccaaggagcgactcgcggcgatggc
gtcaccggcgaagatgtcaccgccaacctgcgtaccctgcctaccatcccgcaacgcttg
caaagcgacacatggccaaccgtgttggaagtgcgcggcgaagtgtatatgccacgtcct
gactttgaagcctacaacacccaggcccggcttcgcggatggaaagtactggccaatccc
cgcaatggcgccgccggctccttgcggcaactggacccacacatcaccgcacagcgcccc
ctgagcttctatgcctacggtatcggcgaagtgaccgatgacgtagcgttccaccgccac
tccgaaatcctggcctccctacgtgcctggggattccccgtctcccccctcgtggagctg
gtgtatggcagtgaaggactactgaattactaccgccggatggaaaccattcgcgatacc
ttaccgtttgatattgatggcatcgtttataaactcgacgacctgtctggccagcatgaa
atggggtttgtcgcccgtgccccccgttgggccattgcccataaatttccggcccaagaa
caaaccaccactgttgaagccattgaaatccagattggccgcaccggtgcggccacccca
gtcgcacgcctgacccccgtacaagtcgctggagtcaccgttaccagcgtcaccttgcat
aacgctgaccagatcgcccgcttggatgtacgcatcggtgataccgtcatcgtgcgccgt
gctggtgacgtgattcctgaagtcgtcgcagtcatcaccgacagccgcccccctggagcc
accgcatggagcatgccgatggcgtgccccgtctgtggttccgagattgttcgtgaaaca
ggcgccgctgtatggcgttgctccggtgaactcgcctgtcccgcccaacgcaaagaggcc
atccgccatttcgtctcccgccgcgctatggatgtcgaagggctgggcgtcaagtgcatt
gaattactggtggatgccgccgttgtccacggcgtcgctgacctgtatcacctgagcctg
gatcaactgctgcggctccgcctcgtcaccaatgcccaaacccccaccatgctcctgcgc
gaagcgcgcgaccatgtgaccggcatgcgttaccaacaattagaagagatactgcgcacc
gtgggtgtggacctgtctggtgaaggtgacgtgcccaagcattggcagattgacgtattg
cgtgcccaatggccggactttgattggaaccacaaaaagattgccaccaagtgggcgcag
aacctgattgctgccattgaccgctcacggcagactaccttggagcgtttcctctttgcc
cttggcatgacccatgtcggcgaaaccaccgccaaagcactggcgcactccttcggggac
ttagcaatcattcggcaactcccttggcccttattcaaatgcgtcccggatattggaggc
gaagtggcacgtgccatcggccactttatggatcagcccgccaaccaacaggccattgat
gacctagtggagcgtggcgtgcgtatcaccgatgcccatccccccacatctacattgcgc
gatcaactcaccctggccagcctcttggaacacttggagattccaaaaatcaccccactg
cgtgctgtccagttagccaccctcgctcccacattgcccttattggctgaagccgacctt
gatgcactccttcaggcgggcgtgccccagcctgctgcacaatcattgaccgaatggttc
caatctcctgataacatctccttagcccgccgcctccagcactgctgtgacgtactgttg
gcacaactgctatctcccgatcgtgcccacactgccccactcaacggccagagcgtcgta
ctgacaggcaaattagcgtcactgacccgtgaagccgccgccactcgactagaaagcttg
ggagccaaaattgtcggcagtgtgtccaaaaaaaccagcttccttgttgctggagaagat
ccaggctccaaactcgacaaagcccacgccttgcatgtcgatatttgggatgaagcccgt
ctactcgcctttctggaacaatacagtgcccaatag
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