KEGG   Xiphophorus maculatus (southern platyfish): 102233408
Entry
102233408         CDS       T02923                                 
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma04010  MAPK signaling pathway
xma04137  Mitophagy - animal
xma04141  Protein processing in endoplasmic reticulum
xma04210  Apoptosis
xma04217  Necroptosis
xma04621  NOD-like receptor signaling pathway
xma04622  RIG-I-like receptor signaling pathway
xma04920  Adipocytokine signaling pathway
xma05132  Salmonella infection
xma05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    102233408
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    102233408
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    102233408
  09143 Cell growth and death
   04210 Apoptosis
    102233408
   04217 Necroptosis
    102233408
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    102233408
   04622 RIG-I-like receptor signaling pathway
    102233408
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    102233408
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    102233408
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    102233408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xma03019]
    102233408
   04121 Ubiquitin system [BR:xma04121]
    102233408
Enzymes [BR:xma01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     102233408
Messenger RNA biogenesis [BR:xma03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     102233408
Ubiquitin system [BR:xma04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    102233408
SSDB
Motif
Pfam: TRAF-mep_MATH TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-C3HC4_4 zf-RING_5 zf-C3HC4_2 Sina_ZnF zf-C3HC4_3 zf-RING_6 zf-RING_2 TRAFD1-XIAF1_ZnF ATG16 zf-RING_UBOX
Other DBs
NCBI-GeneID: 102233408
NCBI-ProteinID: XP_005803805
Ensembl: ENSXMAG00000005507
UniProt: A0A3B5QP88
LinkDB
Position
8:15293407..15305892
AA seq 516 aa
MARISLDSQNSLPGIPLSVLSVPMENKYKCQQCLQVLRKPVQAQCGHRFCVHCFKLLTSA
GPKPCEACRQEEIYEEPMSILNSNEAFPDNAAGREIASLPARCLNQGCSWTGSIKEYEAQ
HEGRCEYERVQCEACQASILLKDKDRHNERECEARTLNCKYCKVTFNFKDIKAHDEICLK
FPLQCKDCGKKKIPREKFSDHIKSCVKSKSACPFSEVGCKTVIENGKLSDHEHSSTMEHL
RLLLPMVLTMTHPRSEALGSGELQEDSGLGLYRAPEEGDGAAAAAQPVDLEKKVIALENI
VCVLNREVERSSLTLEAFAHQHRLDQEKIENLSNRVRQLERTVTMRDLQLSETEQLVREL
QNCTYDGIFVWKINDFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGT
HLSLFFVVMKGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDISSTSFQRPISEMNI
ASGCPLFCPLAKLAGKSPYLRDDTIFIKAIVDLTGL
NT seq 1551 nt   +upstreamnt  +downstreamnt
atggctcgcatctctttggactctcaaaactctttaccaggaattcctttgagtgtgctg
tctgtgcccatggagaataagtacaaatgtcagcagtgtctccaggtcctgaggaaacct
gtccaggctcagtgtggccaccgcttctgtgtgcactgcttcaagctgctcaccagcgct
ggtccaaagccttgtgaagcctgccgccaagaggagatctatgaggagcccatgtccatc
ctgaacagtaatgaggcatttccagacaacgcagccgggcgagaaatagcgagtctgcct
gccaggtgtttgaaccagggctgcagctggactggatctataaaagagtacgaggctcaa
catgaaggccgctgtgaatacgaacgggtgcagtgcgaggcctgccaggcctccatcctc
ctcaaggacaaggacagacacaacgagagagaatgcgaggcgagaacgctcaactgcaaa
tactgcaaagttacattcaattttaaggacattaaggcccacgatgagatctgtctcaag
tttcccttacaatgtaaagattgcggcaagaagaagatccccagagaaaagttcagtgac
cacatcaaatcctgtgtcaagtcgaagagcgcctgtccattcagcgaagtgggctgtaaa
actgtgatagagaacgggaagctgagcgaccatgagcacagcagcaccatggagcatctg
cgtctgctgctgccgatggtgctgacgatgacccatccgcgaagtgaggccctcggatcc
ggggagctgcaggaggactcgggtctgggtctgtacagagctcctgaggagggagacgga
gctgcagccgccgcacagcctgtagacctggaaaaaaaagtaattgctttagaaaacatt
gtgtgtgtcctgaaccgggaagtggagcgcagttcactcaccctggaggctttcgcccac
cagcatcgactagaccaggagaaaattgaaaacctgtcgaacagagtgcggcagctcgag
cgaacggtgaccatgagagacctgcagctgtcggagaccgagcagctggtgcgcgagctt
cagaactgcacctacgacgggatattcgtctggaaaatcaacgacttctctcggcgcagg
caggacgccgtggccggccgaacgcctgccatgttctcacccgcattttactccagcaaa
tacggctacaaaatgtgtctcaggctttatctgaacggcgacgggaccggacggggcacg
cacctctccctgttctttgtggtcatgaagggaaagtgcgacgctctgctaaagtggccc
ttcagtcaaaaggtgactctgatgctcctggatcagaacaacagggagcacatcatcgac
gctttccgacccgacatctcctccacctccttccagcggccgatcagcgagatgaacatc
gccagcggctgcccgctcttctgtccgctggctaagctggccggcaagagcccatatctg
agagatgatacgatatttatcaaagcaatcgtagacctcacaggcttgtga

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