Xiphophorus maculatus (southern platyfish): 102233408
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Entry
102233408 CDS
T02923
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04010
MAPK signaling pathway
xma04137
Mitophagy - animal
xma04141
Protein processing in endoplasmic reticulum
xma04210
Apoptosis
xma04217
Necroptosis
xma04621
NOD-like receptor signaling pathway
xma04622
RIG-I-like receptor signaling pathway
xma04920
Adipocytokine signaling pathway
xma05132
Salmonella infection
xma05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
102233408
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102233408
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
102233408
09143 Cell growth and death
04210 Apoptosis
102233408
04217 Necroptosis
102233408
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
102233408
04622 RIG-I-like receptor signaling pathway
102233408
09152 Endocrine system
04920 Adipocytokine signaling pathway
102233408
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
102233408
09171 Infectious disease: bacterial
05132 Salmonella infection
102233408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102233408
04121 Ubiquitin system [BR:
xma04121
]
102233408
Enzymes [BR:
xma01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102233408
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
102233408
Ubiquitin system [BR:
xma04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
102233408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_4
zf-RING_5
zf-C3HC4_2
Sina_ZnF
zf-C3HC4_3
zf-RING_6
zf-RING_2
TRAFD1-XIAF1_ZnF
ATG16
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
102233408
NCBI-ProteinID:
XP_005803805
Ensembl:
ENSXMAG00000005507
UniProt:
A0A3B5QP88
LinkDB
All DBs
Position
8:15293407..15305892
Genome browser
AA seq
516 aa
AA seq
DB search
MARISLDSQNSLPGIPLSVLSVPMENKYKCQQCLQVLRKPVQAQCGHRFCVHCFKLLTSA
GPKPCEACRQEEIYEEPMSILNSNEAFPDNAAGREIASLPARCLNQGCSWTGSIKEYEAQ
HEGRCEYERVQCEACQASILLKDKDRHNERECEARTLNCKYCKVTFNFKDIKAHDEICLK
FPLQCKDCGKKKIPREKFSDHIKSCVKSKSACPFSEVGCKTVIENGKLSDHEHSSTMEHL
RLLLPMVLTMTHPRSEALGSGELQEDSGLGLYRAPEEGDGAAAAAQPVDLEKKVIALENI
VCVLNREVERSSLTLEAFAHQHRLDQEKIENLSNRVRQLERTVTMRDLQLSETEQLVREL
QNCTYDGIFVWKINDFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGT
HLSLFFVVMKGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDISSTSFQRPISEMNI
ASGCPLFCPLAKLAGKSPYLRDDTIFIKAIVDLTGL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcatctctttggactctcaaaactctttaccaggaattcctttgagtgtgctg
tctgtgcccatggagaataagtacaaatgtcagcagtgtctccaggtcctgaggaaacct
gtccaggctcagtgtggccaccgcttctgtgtgcactgcttcaagctgctcaccagcgct
ggtccaaagccttgtgaagcctgccgccaagaggagatctatgaggagcccatgtccatc
ctgaacagtaatgaggcatttccagacaacgcagccgggcgagaaatagcgagtctgcct
gccaggtgtttgaaccagggctgcagctggactggatctataaaagagtacgaggctcaa
catgaaggccgctgtgaatacgaacgggtgcagtgcgaggcctgccaggcctccatcctc
ctcaaggacaaggacagacacaacgagagagaatgcgaggcgagaacgctcaactgcaaa
tactgcaaagttacattcaattttaaggacattaaggcccacgatgagatctgtctcaag
tttcccttacaatgtaaagattgcggcaagaagaagatccccagagaaaagttcagtgac
cacatcaaatcctgtgtcaagtcgaagagcgcctgtccattcagcgaagtgggctgtaaa
actgtgatagagaacgggaagctgagcgaccatgagcacagcagcaccatggagcatctg
cgtctgctgctgccgatggtgctgacgatgacccatccgcgaagtgaggccctcggatcc
ggggagctgcaggaggactcgggtctgggtctgtacagagctcctgaggagggagacgga
gctgcagccgccgcacagcctgtagacctggaaaaaaaagtaattgctttagaaaacatt
gtgtgtgtcctgaaccgggaagtggagcgcagttcactcaccctggaggctttcgcccac
cagcatcgactagaccaggagaaaattgaaaacctgtcgaacagagtgcggcagctcgag
cgaacggtgaccatgagagacctgcagctgtcggagaccgagcagctggtgcgcgagctt
cagaactgcacctacgacgggatattcgtctggaaaatcaacgacttctctcggcgcagg
caggacgccgtggccggccgaacgcctgccatgttctcacccgcattttactccagcaaa
tacggctacaaaatgtgtctcaggctttatctgaacggcgacgggaccggacggggcacg
cacctctccctgttctttgtggtcatgaagggaaagtgcgacgctctgctaaagtggccc
ttcagtcaaaaggtgactctgatgctcctggatcagaacaacagggagcacatcatcgac
gctttccgacccgacatctcctccacctccttccagcggccgatcagcgagatgaacatc
gccagcggctgcccgctcttctgtccgctggctaagctggccggcaagagcccatatctg
agagatgatacgatatttatcaaagcaatcgtagacctcacaggcttgtga
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integrated database retrieval system