Xenopus tropicalis (tropical clawed frog): 100488055
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Entry
100488055 CDS
T01011
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C isoform X2
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04010
MAPK signaling pathway
xtr04020
Calcium signaling pathway
xtr04260
Cardiac muscle contraction
xtr04261
Adrenergic signaling in cardiomyocytes
xtr04270
Vascular smooth muscle contraction
xtr04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
100488055 (cacna1c)
04020 Calcium signaling pathway
100488055 (cacna1c)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
100488055 (cacna1c)
09153 Circulatory system
04260 Cardiac muscle contraction
100488055 (cacna1c)
04261 Adrenergic signaling in cardiomyocytes
100488055 (cacna1c)
04270 Vascular smooth muscle contraction
100488055 (cacna1c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xtr04040
]
100488055 (cacna1c)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
100488055 (cacna1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
CAC1F_C
PKD_channel
Motif
Other DBs
NCBI-GeneID:
100488055
NCBI-ProteinID:
XP_004912541
Xenbase:
XB-GENE-991126
UniProt:
A0A8J0R253
LinkDB
All DBs
Position
3:complement(8858090..9149875)
Genome browser
AA seq
2176 aa
AA seq
DB search
MFHNLIRQANATYRPMPRDMAPRPSVVAKGQMVSETELDYVHIPPGGSNYTNPLPALGTM
NSTPGLATEHIASPGAALSWQAAIDAARQAKLMGAAANATISTVSSTQRKRQQYSKQKKQ
GTTTATRPPRALLCLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAVYIPFPEDDS
NATNSNLERVEYLFLIIFTVEAFLKVIAYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAIL
EQATKADGGSAIGGKGAGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIA
LLVLFVIIIYAIIGLELFMGKMHKTCYYLTNGYPDVLTEEEPSPCALESNNGRHCPNGTL
CRSGWVGPKHGITNFDNFAFAMLTVFQCITMEGWTDVLYWMQDAMGYELPCVYFVSLVIF
GSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEEDLKGYLDWITQAEDIDPEN
EDEDIDEEKPRNMSMPTSETESVNTDNVGSGDVEEESCGVRLAHRISKSKFSRYWRRWNR
FCRRKCRAAVKSNVFYWLVIFLVFLNTLTIASEHYNQPDWLTEVQDTANKVLLALFTAEM
LLKMYSLGLQAYFVSLFNRFDCFIVCGGILETILVETRIMSPLGISVLRCVRLLRIFKIT
RYWNSLSNLVASLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMLTRRSTFDN
FPQALLTVFQILTGEDWNSVMYDGIMAYGGPSFPGMLVCIYFIILFICGNYILLNVFLAI
AVDNLADAESLTSAQKEEEEEKERKKLARTASPEKKQENESLGKSPVPAVEENKEKIELK
AITADGESPPNTKISVEEFSTNENEEKTPYPSSNETPGEEEEEEPEMPVGPRPRPLSELH
IKEKAAPMPEASAFFVFRSDNRFRVHCHRIVNNNIFTNLILFFILLSSISLAAEDPVRHN
SFRNQVLFYFDIVFTAIFTVEIVLKMTAYGAFLHKGSFCRNYFNILDLLVVSVSLISFGI
QSSAINVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVIVTTLLQFMFACI
GVQLFKGKLYSCTDSSKITEAECKGKYITYKDGDVSQPMIVDRSWENSKFDFDNVLSAMM
ALFTVSTFEGWPELLYRAIDSHTEDVGPIYNHRVEISIFFIIYIIIIAFFMMNIFVGFVI
VTFQEQGEQEYKNCELDKNQRQCVEYALKARPLRRYIPKNQYQYKVWYVVNSTYFEYLMF
VLILLNTICLAMQHYGQSCSFKEAMNILNMLFTGLFTVEMILKLIAFKPKGYFSDPWNVF
DFLIVIGSVVDVILSETNHYFCDAWNTFDALIVVGSIVDIAITELNPGEHAQCSSSMNVE
ENSRISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIG
MQVFGKIALNDTTEINRNNNFQTFPQAVLLLFRCATGEAWQEIMLACLPSKPCAPESETS
EEKCGSSFAVFYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAE
YDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLF
ALVRTSLCIKTDGNLEQANEELRAIIKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFL
IQEYFRKFKKRKEQGLVGKPSQRNALSLQAGLRTLHDIGPEIRRAISGDLTAEEELDKAM
KEAVSAASEDDIFRRAGGLFGNHVGYYQSEVRSAFPQTFTTQRPLHINKTSGGPGDLDSP
SHEKLVDSTFTPSSYSSSGSNANINNANNTALVRLPCYRSTVSTVEGQSRPVTSRGSWKL
GSKSSVSRDSRLPIICREEASQDETYDASEEVEYSSEPSLLCSEMFSDRDEESRQLTPSE
GEVERGLCPSPKKGFLRSASLGRRASFHLECLRRYRHQGAEMSSPKAVLPQLHLVHHQAL
AVAGLSPLLRRSHSPTAFSRLCSTPPATPCPRGGWMQQTVPTLRLHGEPGSRENLNSSFP
SIHCSDCSIGRNRPSSLTVPCHPREQGRQHHGSASSLVEAVLISEGLAQFAQDPRFLQVA
THELADACDMTIEEMETAADSFLNGKASPNGKLSPFSHRRDQGLDCAGGGSEETGLSPEC
QDSDEPEDCQVYVSSL
NT seq
6531 nt
NT seq
+upstream
nt +downstream
nt
atgttccataacctcatccgccaagccaatgctacctaccggccaatgcctagagacatg
gcaccccgacccagcgtggtcgctaaaggccaaatggtttcagagacggaacttgactac
gtccacatcccacctggaggttctaactacaccaacccactgccggcgctgggcaccatg
aactcgacccctggcctggcaacggagcacatcgcctctccgggcgctgctctgtcctgg
caagccgccatcgatgcagcacgccaggccaagcttatgggcgcggcggctaacgccacc
atatctacggtgagctccacacagaggaagaggcagcagtacagcaagcaaaaaaagcaa
gggaccaccacagccacaaggccgccccgggcgttgctctgtttgaccctgaaaaacccc
atccgacgagcctgcatcagtattgtggaatggaaaccgtttgaaattattattttactg
actatctttgccaactgtgtggccttagctgtctacatccctttcccagaggatgattcc
aacgcgactaactccaatctggaacgggtagaatatctcttcctcatcattttcacagtg
gaagccttcttaaaagtcattgcatacgggcttctgttccaccccaacgcttacctccgc
aacggctggaatctgctggatttcattattgtagtagtagggcttttcagtgcaatttta
gagcaggccacaaaggcagacgggggcagcgccattggagggaaaggagccggatttgac
gtgaaagcacttcgggcgttcagagtcttgagacccctaaggctggtgtctggagtcccc
agcctccaggtggtgctgaattccattataaaggctatggttccactgctgcatatcgct
ctgctggtgctgtttgtcattattatctatgctataattgggttggagctgttcatgggc
aaaatgcacaagacctgctactacctgacaaatggatatccagatgttctcacagaggaa
gaaccctcaccgtgtgcattggagagcaataatgggcggcactgtcccaacggcactttg
tgcagatctggttgggtgggacccaaacacggcatcactaatttcgacaactttgcattt
gccatgctcactgtcttccaatgcatcaccatggagggctggacagatgtgctctactgg
atgcaggacgccatgggatacgaactgccctgtgtctactttgtcagtctcgtcatcttt
ggatcattctttgttctgaacctggttcttggtgtcctgagtggtgagttttccaaagag
agagagaaggccaaggctcggggcgacttccagaagcttagagagaagcagcagctggag
gaggacctgaaaggctatttggactggatcactcaggctgaggacatcgacccagagaat
gaagatgaagatattgacgaagagaaacctcggaatatgagcatgccaaccagcgagacg
gagtcggtcaacacagacaacgtgggcagtggcgacgtggaagaagagagctgcggagta
cgccttgcgcacaggatttccaagtctaaatttagtcggtactggcggagatggaaccgg
ttttgcagaaggaagtgtagggcggctgtaaaatcaaacgtcttttattggctggttata
tttcttgtgtttctgaacactctgaccatcgcttctgagcactataaccaacccgattgg
cttaccgaggtacaagacacagccaacaaagtgctcctggctctcttcacagcagagatg
cttctcaaaatgtacagccttggcctgcaagcctactttgtttccctgtttaatcggttt
gactgcttcattgtgtgtggtgggatcttggagaccatattagtcgagactaggatcatg
tcacccttgggaatctccgtgctgcgctgtgtgcgccttctcaggatattcaagattacc
aggtactggaactctctgagtaatcttgtggcctcgctgctgaattccgtgcgctccatc
gcttcccttctcctccttctcttcctcttcatcatcatcttttcccttctggggatgcaa
ctctttggcggcaaatttaactttgacgagatgctgacccgcaggagcacgttcgataac
ttcccacaggctttgcttactgtctttcagatccttaccggagaggactggaactcagta
atgtatgatggaatcatggcatatgggggaccctcctttcctgggatgcttgtgtgcatt
tatttcatcatactcttcatctgtggaaattatatacttctgaatgtcttcttggccatt
gctgtggacaacttggccgatgctgagagtcttacctctgctcagaaagaggaagaagaa
gagaaggagaggaagaaactagcaagaactgctagccctgagaagaaacaggagaatgag
tccctagggaagtctccagtgccagccgtggaggagaacaaagagaagatagagttgaag
gccatcacggcagacggggagtctccacccaacaccaagatcagcgtggaagagttttcg
accaatgagaatgaggagaagaccccctatcccagctccaatgaaaccccaggtgaggag
gaagaagaagagcctgagatgcctgttggccctcgcccaaggcctctgtcggagttgcac
atcaaggagaaagctgccccaatgcctgaagcctctgcctttttcgtattccgctcagat
aacaggttccgcgtccactgccaccgaatagtcaacaataacatcttcaccaaccttatc
cttttcttcattctcttgagcagcatttccctggcagcggaagacccagtgcgacacaac
tccttcaggaaccaagttctgttttatttcgatatagttttcactgccattttcaccgta
gagatagtcctgaagatgacggcctatggggctttcttgcacaaaggctccttttgcagg
aactacttcaacatcctggatcttctggtggtcagtgtctccctcatctcctttggaatc
caatccagcgccatcaacgtagtcaagatcttacgagtacttagggtgctgaggcccctg
agagccatcaaccgagccaaggggctaaagcacgtggtacagtgtgtgtttgtggctatc
cgcaccattggcaacatcgtcattgtcaccactctgctgcaatttatgtttgcttgtatc
ggggtgcaacttttcaagggtaaattgtacagctgcaccgacagctccaagattacagag
gcagagtgcaaagggaagtacatcacctataaggatggggatgtctcacagcccatgata
gtggatcggagctgggagaacagcaagtttgacttcgataatgttctttcggcaatgatg
gccctcttcactgtctccacatttgaggggtggccggagctgctctatcgtgccattgac
tcccacacagaagacgtgggtcccatctacaaccaccgcgtggagatctccatcttcttc
atcatctacatcatcatcatcgccttcttcatgatgaacatcttcgtgggttttgtcatt
gtcacgtttcaggagcagggggagcaggagtacaagaactgcgagctggacaagaaccag
cgtcagtgtgtggagtacgccctgaaagcacgtcctctgaggagatacatacccaaaaat
cagtaccagtacaaagtctggtatgtggtcaactccacctatttcgagtacctcatgttc
gtgctcattttactcaacaccatctgtctcgccatgcagcactacgggcagagctgttct
ttcaaggaagccatgaacatcctcaacatgttgttcacgggactcttcacggttgagatg
atcctgaagctcattgcctttaagccaaagggttattttagtgacccttggaatgtcttt
gactttctcatcgttattggcagcgtagttgacgtcattctcagcgagaccaatcactat
ttctgtgatgcatggaacacatttgatgcactgatagtagtgggtagcattgttgatata
gcaatcaccgaactcaacccaggtgaacatgcccaatgctcctcctctatgaacgtcgag
gagaattcccgcatctccatcaccttcttcaggctcttccgagtcatgaggcttgtgaag
cttctcagccgcggagaagggatccggactctgctatggactttcatcaagtctttccag
gctctcccctatgtagcgctgctcattgtcatgctgttctttatctacgccgtcattggc
atgcaggtttttgggaaaattgcactgaatgacaccaccgaaatcaacaggaacaataat
tttcagactttccctcaggcagttctgctcctcttcagatgtgccacaggtgaagcctgg
caggagataatgctcgcctgtctccccagtaagccctgtgcccccgaatccgaaaccagc
gaagaaaagtgcggcagcagctttgccgtcttctattttatcagcttctacatgctctgc
gccttcttgatcattaatctgtttgttgctgtcatcatggataattttgactatctgaca
cgggattggtccatattgggccctcatcatttggatgaatttaaacggatttgggcagag
tatgatccagaagccaaggggcgcatcaagcatctggatgttgtgaccctactaagacgg
attcagccccccctgggctttgggaagctgtgcccccatcgggtggcatgtaagcgcctt
gtggctatgaacatgccactgaatagtgatggaacagtcatgtttaatgccacgctcttt
gccttagttaggacatctctgtgcatcaagacagacgggaacctggaacaggccaatgag
gagctgagagccatcatcaaaaagatatggaagagaaccagcatgaaacttttggaccag
gtggtgcctccggctggggatgatgaggtcacggtgggaaagttctatgccaccttcctg
atccaggagtatttccgaaagttcaagaaacgcaaagagcaagggcttgtgggtaaacct
tcccagagaaatgcactgtccctgcaggccggcctacgcactctacatgacattggcccc
gagatccgcagggctatttctggagacctgacggctgaggaggagctggacaaggccatg
aaggaggctgtgtctgcagcatctgaggacgacatttttaggagggctggaggactgttt
gggaaccacgttggttattaccagagtgaagtccggagtgcgtttcctcagacgttcact
acccagcggcctctgcacatcaacaagacatcgggcgggccgggggatctggactctcct
tcccatgagaagctggtggattctacattcacccccagcagctactcttcctccggctcg
aacgccaacatcaacaacgctaacaacacggcactggtgcgcctgccctgttaccggagt
accgtgagcaccgtggagggacagagccggcccgtgacctcccgtggctcctggaaactt
ggctctaagagctcggtgtccagagacagtcgtctgccaataatctgccgggaggaggcc
tcgcaggatgagacgtatgacgccagcgaagaggtggaatatagcagtgagcccagcctg
ctgtgctctgaaatgttctccgatcgggatgaggaaagccggcagctaaccccatctgag
ggggaagtggagagggggctttgcccgtcccccaagaaaggtttcctgcgctcagcttct
ttaggaaggagagcgtcgttccatttggagtgcctgaggcggtatcggcaccagggggca
gaaatgtcgtcgcccaaagcggtattaccacagcttcaccttgtgcatcatcaggcttta
gcagtggcgggccttagcccgttactaaggcggagtcactcgcccacagccttctcacgt
ctctgttccacgccgcctgccaccccgtgcccccgaggaggctggatgcagcaaaccgtg
ccgacgttacggctgcacggagagccgggctctcgggaaaacctgaacagtagcttccct
tccatccactgcagtgactgcagcatagggcgtaaccggccctcctccctcacagtaccc
tgccacccacgggagcaaggcaggcagcaccatggcagcgccagcagtttagtagaagcg
gtgctgatctccgaagggctggcgcagtttgctcaggacccccgcttcctccaggtggcg
acacacgagctggccgacgcctgtgacatgacgatagaggagatggagactgccgctgac
agctttttgaatggcaaagccagccccaatgggaagctgtccccattctctcaccgtagg
gaccaggggctggactgcgcggggggtgggtcggaggagacaggactctcaccggaatgc
caggacagtgacgagccggaggactgccaggtgtatgtaagcagcctgtag
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integrated database retrieval system
