KEGG   ENZYME: 2.3.1.330
Entry
EC 2.3.1.330                Enzyme                                 
Name
D-xylulose 5-phosphate:acyl-carrier protein glycolyltransferase system;
sclQ1/sclQ2/sclQ3 (gene names);
napB/napD (gene names);
QncN/QncL (gene names)
Class
Transferases;
Acyltransferases;
Transferring groups other than aminoacyl groups
Sysname
D-xylulose 5-phosphate:acyl-carrier protein glycolyltransferase
Reaction(IUBMB)
D-xylulose 5-phosphate + [acp] + a [lipoyl-carrier protein]-N6-[(R)-lipoyl]-L-lysine = D-glyceraldehyde 3-phosphate + glycolyl-[acp] + a [lipoyl-carrier protein]-N6-[(R)-dihydrolipoyl]-L-lysine (overall reaction) [RN:R13512];
(1a) D-xylulose 5-phosphate + a [lipoyl-carrier protein]-N6-[(R)-lipoyl]-L-lysine = D-glyceraldehyde 3-phosphate + a [lipoyl-carrier protein]-N6-[glycolyl-(R)-dihydrolipoyl]-L-lysine [RN:R13513];
(1b) a [lipoyl-carrier protein]-N6-[glycolyl-(R)-dihydrolipoyl]-L-lysine + [acp] = glycolyl-[acp] + a [lipoyl-carrier protein]-N6-[(R)-dihydrolipoyl]-L-lysine [RN:R13514]
Reaction(KEGG)
Substrate
D-xylulose 5-phosphate [CPD:C00231];
acp [CPD:C00229];
[lipoyl-carrier protein]-N6-[(R)-lipoyl]-L-lysine;
[lipoyl-carrier protein]-N6-[glycolyl-(R)-dihydrolipoyl]-L-lysine [CPD:C23051]
Product
D-glyceraldehyde 3-phosphate [CPD:C00118];
glycolyl-[acp] [CPD:C23052];
[lipoyl-carrier protein]-N6-[(R)-dihydrolipoyl]-L-lysine [CPD:C16832];
[lipoyl-carrier protein]-N6-[glycolyl-(R)-dihydrolipoyl]-L-lysine [CPD:C23051]
Comment
This enzyme system produces glycolyl-[acp] units that can be used by non-ribosomal peptide synthases. It catalyses a transketolase-like reaction on ketose phosphates derived from primary metabolism and transfers the resulting glycolyl moiety to a dedicated acyl-carrier protein. During the reaction cycle the glycolyl moiety is transferred first to a thiamine diphosphate cofactor, then to a lipoyl cofactor, and eventually to the acyl-carrier protein. While D-xylulose 5-phosphate is the best substrate, the enzyme can also accept D-fructose 6-phosphate and D-sedheptulose 7-phosphate. During the reaction the lipoyl cofactor is reduced to dihydrolipoyl, which must be oxidized back to lipoyl by an unknown enzyme.
History
EC 2.3.1.330 created 2025
Orthology
K28322  D-xylulose 5-phosphate:acyl-carrier protein glycolyltransferase system subunit alpha
K28323  D-xylulose 5-phosphate:acyl-carrier protein glycolyltransferase system subunit beta
K28324  D-xylulose 5-phosphate:acyl-carrier protein glycolyltransferase system subunit beta
K28325  D-xylulose 5-phosphate:acyl-carrier protein glycolyltransferase system subunit beta
Genes
SNWBBN63_30045 BBN63_30055
SSYIEKG83_30720 EKG83_30730
Reference
1  [PMID:22586110]
  Authors
Peng C, Pu JY, Song LQ, Jian XH, Tang MC, Tang GL.
  Title
Hijacking a hydroxyethyl unit from a central metabolic ketose into a nonribosomal peptide assembly line.
  Journal
Proc Natl Acad Sci U S A 109:8540-5 (2012)
DOI:10.1073/pnas.1204232109
  Sequence
Reference
2  [PMID:30746093]
  Authors
Alberti F, Leng DJ, Wilkening I, Song L, Tosin M, Corre C.
  Title
Triggering the expression of a silent gene cluster from genetically intractable bacteria results in scleric acid discovery.
  Journal
Chem Sci 10:453-463 (2019)
DOI:10.1039/c8sc03814g
  Sequence
Other DBs
ExplorEnz - The Enzyme Database: 2.3.1.330
IUBMB Enzyme Nomenclature: 2.3.1.330
ExPASy - ENZYME nomenclature database: 2.3.1.330
BRENDA, the Enzyme Database: 2.3.1.330
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