| Module |
| M00001 | Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate |
| M00002 | Glycolysis, core module involving three-carbon compounds |
| M00003 | Gluconeogenesis, oxaloacetate => fructose-6P |
| M00004 | Pentose phosphate pathway (Pentose phosphate cycle) |
| M00007 | Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P |
| M00008 | Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate |
| M00061 | D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P |
| M00096 | C5 isoprenoid biosynthesis, non-mevalonate pathway |
| M00165 | Reductive pentose phosphate cycle (Calvin cycle) |
| M00308 | Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P |
| M00345 | Formaldehyde assimilation, ribulose monophosphate pathway |
| M00552 | D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P |
| M00631 | D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P |
| M00633 | Semi-phosphorylative Entner-Doudoroff pathway, gluconate/galactonate => glycerate-3P |
| M00674 | Clavaminate biosynthesis, arginine + glyceraldehyde-3P => clavaminate |
| M00916 | Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P |
| M00935 | Methanofuran biosynthesis |
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