KEGG   DISEASE: Multiple epiphyseal dysplasia
Entry
H00476                      Disease                                
Name
Multiple epiphyseal dysplasia
Description
Multiple epiphyseal dysplasia (EDM) is a genetically heterogeneous condition where ossification of epiphyses is delayed. Mutations causing EDM have been identified in COMP, DTDST, MATN3, COL9A1, COL9A2, and COL9A3. Mutations in the COL2A1 gene cause multiple epiphyseal dysplasia with myopia and conductive deafness (EDMMD).
Category
Congenital malformation
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  Multiple developmental anomalies or syndromes
   LD24  Syndromes with skeletal anomalies as a major feature
    H00476  Multiple epiphyseal dysplasia
Pathway-based classification of diseases [BR:br08402]
 Cellular process
  nt06539  Cytoskeleton in muscle cells
   H00476  Multiple epiphyseal dysplasia
Pathway
hsa04820  Cytoskeleton in muscle cells
hsa04510  Focal adhesion
hsa04151  PI3K-Akt signaling pathway
hsa04512  ECM-receptor interaction
Network
nt06539 Cytoskeleton in muscle cells
Gene
(EDM1) COMP [HSA:1311] [KO:K04659]
(EDM2) COL9A2 [HSA:1298] [KO:K08131]
(EDM3) COL9A3 [HSA:1299] [KO:K08131]
(EDM4) DTDST [HSA:1836] [KO:K14701]
(EDM5) MATN3 [HSA:4148] [KO:K19467]
(EDM6) COL9A1 [HSA:1297] [KO:K08131]
(EDM7) CANT1 [HSA:124583] [KO:K12304]
(EDMMD) COL2A1 [HSA:1280] [KO:K19719]
Other DBs
ICD-11: LD24.61
MeSH: C535501 C535502 C535503 C535504 C535505
OMIM: 132400 600204 600969 226900 607078 614135 132450 617719
Reference
  Authors
Unger S, Bonafe L, Superti-Furga A
  Title
Multiple epiphyseal dysplasia: clinical and radiographic features, differential diagnosis and molecular basis.
  Journal
Best Pract Res Clin Rheumatol 22:19-32 (2008)
DOI:10.1016/j.berh.2007.11.009
Reference
  Authors
Unger S, Hecht JT
  Title
Pseudoachondroplasia and multiple epiphyseal dysplasia: New etiologic developments.
  Journal
Am J Med Genet 106:244-50 (2001)
DOI:10.1002/ajmg.10234
Reference
PMID:12768438 (COMP)
  Authors
Song HR, Lee KS, Li QW, Koo SK, Jung SC
  Title
Identification of cartilage oligomeric matrix protein (COMP) gene mutations in patients with pseudoachondroplasia and multiple epiphyseal dysplasia.
  Journal
J Hum Genet 48:222-225 (2003)
DOI:10.1007/s10038-003-0013-7
Reference
PMID:8528240 (COL9A2)
  Authors
Muragaki Y, Mariman EC, van Beersum SE, Perala M, van Mourik JB, Warman ML, Olsen BR, Hamel BC
  Title
A mutation in the gene encoding the alpha 2 chain of the fibril-associated collagen IX, COL9A2, causes multiple epiphyseal dysplasia (EDM2).
  Journal
Nat Genet 12:103-5 (1996)
DOI:10.1038/ng0196-103
Reference
PMID:10655510 (COL9A3)
  Authors
Bonnemann CG, Cox GF, Shapiro F, Wu JJ, Feener CA, Thompson TG, Anthony DC, Eyre DR, Darras BT, Kunkel LM
  Title
A mutation in the alpha 3 chain of type IX collagen causes autosomal dominant multiple epiphyseal dysplasia with mild myopathy.
  Journal
Proc Natl Acad Sci U S A 97:1212-7 (2000)
DOI:10.1073/pnas.97.3.1212
Reference
PMID:12966518 (DTDST)
  Authors
Makitie O, Savarirayan R, Bonafe L, Robertson S, Susic M, Superti-Furga A, Cole WG
  Title
Autosomal recessive multiple epiphyseal dysplasia with homozygosity for C653S in the DTDST gene: double-layer patella as a reliable sign.
  Journal
Am J Med Genet A 122A:187-92 (2003)
DOI:10.1002/ajmg.a.20282
Reference
PMID:11479597 (MATN3)
  Authors
Chapman KL, Mortier GR, Chapman K, Loughlin J, Grant ME, Briggs MD
  Title
Mutations in the region encoding the von Willebrand factor A domain of matrilin-3 are associated with multiple epiphyseal dysplasia.
  Journal
Nat Genet 28:393-6 (2001)
DOI:10.1038/ng573
Reference
PMID:11565064 (COL9A1)
  Authors
Czarny-Ratajczak M, Lohiniva J, Rogala P, Kozlowski K, Perala M, Carter L, Spector TD, Kolodziej L, Seppanen U, Glazar R, Krolewski J, Latos-Bielenska A, Ala-Kokko L
  Title
A mutation in COL9A1 causes multiple epiphyseal dysplasia: further evidence for locus heterogeneity.
  Journal
Am J Hum Genet 69:969-80 (2001)
DOI:10.1086/324023
Reference
PMID:9800905 (COL2A1)
  Authors
Ballo R, Beighton PH, Ramesar RS
  Title
Stickler-like syndrome due to a dominant negative mutation in the COL2A1 gene.
  Journal
Reference
PMID:28742282 (CANT1)
  Authors
Balasubramanian K, Li B, Krakow D, Nevarez L, Ho PJ, Ainsworth JA, Nickerson DA, Bamshad MJ, Immken L, Lachman RS, Cohn DH
  Title
MED resulting from recessively inherited mutations in the gene encoding calcium-activated nucleotidase CANT1.
  Journal
Am J Med Genet A 173:2415-2421 (2017)
DOI:10.1002/ajmg.a.38349
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KEGG   DISEASE: Stickler syndrome
Entry
H02072                      Disease                                
Name
Stickler syndrome
  Subgroup
Autosomal dominant otospondylomegaepiphyseal dysplasia (OSMEDA)
  Supergrp
Vitreoretinal degeneration [DS:H00805]
Description
Stickler syndrome (STL) is a hereditary connective tissue disorder of fibrillar collagen. It is characterized by ocular signs (myopia, vitreoretinal degeneration, retinal detachment and cataracts), arthropathy, deafness, cleft palate, micrognathia, and a characteristic flat face. Mutations in the COL2A1, COL11A1, COL11A2, COL9A1, and COL9A2 genes can cause Stickler syndrome.
Category
Congenital malformation
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  Multiple developmental anomalies or syndromes
   LD2F  Syndromes with multiple structural anomalies, without predominant body system involvement
    H02072  Stickler syndrome
Pathway-based classification of diseases [BR:br08402]
 Cellular process
  nt06539  Cytoskeleton in muscle cells
   H02072  Stickler syndrome
Pathway
hsa04820  Cytoskeleton in muscle cells
hsa04512  ECM-receptor interaction
hsa04151  PI3K-Akt signaling pathway
hsa04510  Focal adhesion
Network
nt06539 Cytoskeleton in muscle cells
Gene
(STL1) COL2A1 [HSA:1280] [KO:K19719]
(STL2) COL11A1 [HSA:1301] [KO:K19721]
(STL3/OSMEDA) COL11A2 [HSA:1302] [KO:K19721]
(STL4) COL9A1 [HSA:1297] [KO:K08131]
(STL5) COL9A2 [HSA:1298] [KO:K08131]
(STL6) COL9A3 [HSA:1299] [KO:K08131]
Comment
STL3, also known as Stickler syndrome nonocular type, is related to otospondylomegaepiphyseal dysplasia [DS:H02079].
Other DBs
ICD-11: LD2F.1Y
MeSH: C537492 C563709 C537493 C537494 C565177
OMIM: 108300 609508 604841 614134 614284 620022
Reference
  Authors
Rishi P, Maheshwari A, Rishi E
  Title
Stickler syndrome.
  Journal
Indian J Ophthalmol 63:614-5 (2015)
DOI:10.4103/0301-4738.167114
Reference
PMID:16189708 (STL1)
  Authors
Miyamoto Y, Nakashima E, Hiraoka H, Ohashi H, Ikegawa S
  Title
A type II collagen mutation also results in oto-spondylo-megaepiphyseal dysplasia.
  Journal
Hum Genet 118:175-8 (2005)
DOI:10.1007/s00439-005-0058-0
Reference
PMID:15671297 (STL1, nonsyndromic ocular)
  Authors
Richards AJ, Meredith S, Poulson A, Bearcroft P, Crossland G, Baguley DM, Scott JD, Snead MP
  Title
A novel mutation of COL2A1 resulting in dominantly inherited rhegmatogenous retinal detachment.
  Journal
Invest Ophthalmol Vis Sci 46:663-8 (2005)
DOI:10.1167/iovs.04-1017
Reference
PMID:8872475 (STL2)
  Authors
Richards AJ, Yates JR, Williams R, Payne SJ, Pope FM, Scott JD, Snead MP
  Title
A family with Stickler syndrome type 2 has a mutation in the COL11A1 gene resulting in the substitution of glycine 97 by valine in alpha 1 (XI) collagen.
  Journal
Hum Mol Genet 5:1339-43 (1996)
DOI:10.1093/hmg/5.9.1339
Reference
PMID:7833911 (STL3)
  Authors
Brunner HG, van Beersum SE, Warman ML, Olsen BR, Ropers HH, Mariman EC
  Title
A Stickler syndrome gene is linked to chromosome 6 near the COL11A2 gene.
  Journal
Hum Mol Genet 3:1561-4 (1994)
DOI:10.1093/hmg/3.9.1561
Reference
PMID:21421862 (STL4)
  Authors
Nikopoulos K, Schrauwen I, Simon M, Collin RW, Veckeneer M, Keymolen K, Van Camp G, Cremers FP, van den Born LI
  Title
Autosomal recessive Stickler syndrome in two families is caused by mutations in the COL9A1 gene.
  Journal
Invest Ophthalmol Vis Sci 52:4774-9 (2011)
DOI:10.1167/iovs.10-7128
Reference
PMID:21671392 (STL5)
  Authors
Baker S, Booth C, Fillman C, Shapiro M, Blair MP, Hyland JC, Ala-Kokko L
  Title
A loss of function mutation in the COL9A2 gene causes autosomal recessive Stickler syndrome.
  Journal
Am J Med Genet A 155A:1668-72 (2011)
DOI:10.1002/ajmg.a.34071
Reference
PMID:24273071 (STL6)
  Authors
Faletra F, D'Adamo AP, Bruno I, Athanasakis E, Biskup S, Esposito L, Gasparini P
  Title
Autosomal recessive Stickler syndrome due to a loss of function mutation in the COL9A3 gene.
  Journal
Am J Med Genet A 164A:42-7 (2014)
DOI:10.1002/ajmg.a.36165
LinkDB

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KEGG   DISEASE: Intervertebral disc disease
Entry
H02539                      Disease                                
Name
Intervertebral disc disease
  Subgroup
Lumbar disc disease
Description
Intervertebral disc degeneration (IDD) is a common musculoskeletal disease associated with genetic factors.
Category
Musculoskeletal disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 15 Diseases of the musculoskeletal system or connective tissue
  Conditions associated with the spine
   Degenerative condition of spine
    FA80  Intervertebral disc degeneration
     H02539  Intervertebral disc disease
Pathway-based classification of diseases [BR:br08402]
 Cellular process
  nt06539  Cytoskeleton in muscle cells
   H02539  Intervertebral disc disease
Pathway
hsa04820  Cytoskeleton in muscle cells
hsa04510  Focal adhesion
hsa04151  PI3K-Akt signaling pathway
hsa04512  ECM-receptor interaction
Network
nt06539 Cytoskeleton in muscle cells
Gene
COL11A1 [HSA:1301] [KO:K19721]
COL9A3 [HSA:1299] [KO:K08131]
THBS2 [HSA:7058] [KO:K04659]
ASPN [HSA:54829] [KO:K08120]
CILP [HSA:8483] [KO:K24436]
Other DBs
ICD-11: FA80
MeSH: D055959
OMIM: 603932
Reference
  Authors
Huang D, Deng X, Ma K, Wu F, Shi D, Liang H, Chen S, Shao Z
  Title
Association of COL9A3 trp3 polymorphism with intervertebral disk degeneration: a meta-analysis.
  Journal
BMC Musculoskelet Disord 19:381 (2018)
DOI:10.1186/s12891-018-2297-y
Reference
  Authors
Mio F, Chiba K, Hirose Y, Kawaguchi Y, Mikami Y, Oya T, Mori M, Kamata M, Matsumoto M, Ozaki K, Tanaka T, Takahashi A, Kubo T, Kimura T, Toyama Y, Ikegawa S
  Title
A functional polymorphism in COL11A1, which encodes the alpha 1 chain of type XI collagen, is associated with susceptibility to lumbar disc herniation.
  Journal
Am J Hum Genet 81:1271-7 (2007)
DOI:10.1086/522377
Reference
  Authors
Hirose Y, Chiba K, Karasugi T, Nakajima M, Kawaguchi Y, Mikami Y, Furuichi T, Mio F, Miyake A, Miyamoto T, Ozaki K, Takahashi A, Mizuta H, Kubo T, Kimura T, Tanaka T, Toyama Y, Ikegawa S
  Title
A functional polymorphism in THBS2 that affects alternative splicing and MMP binding is associated with lumbar-disc herniation.
  Journal
Am J Hum Genet 82:1122-9 (2008)
DOI:10.1016/j.ajhg.2008.03.013
Reference
  Authors
Song YQ, Cheung KM, Ho DW, Poon SC, Chiba K, Kawaguchi Y, Hirose Y, Alini M, Grad S, Yee AF, Leong JC, Luk KD, Yip SP, Karppinen J, Cheah KS, Sham P, Ikegawa S, Chan D
  Title
Association of the asporin D14 allele with lumbar-disc degeneration in Asians.
  Journal
Am J Hum Genet 82:744-7 (2008)
DOI:10.1016/j.ajhg.2007.12.017
Reference
  Authors
Seki S, Kawaguchi Y, Chiba K, Mikami Y, Kizawa H, Oya T, Mio F, Mori M, Miyamoto Y, Masuda I, Tsunoda T, Kamata M, Kubo T, Toyama Y, Kimura T, Nakamura Y, Ikegawa S
  Title
A functional SNP in CILP, encoding cartilage intermediate layer protein, is associated with susceptibility to lumbar disc disease.
  Journal
Nat Genet 37:607-12 (2005)
DOI:10.1038/ng1557
LinkDB

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