KEGG   DISEASE: Tumor predisposition syndrome
Entry
H02624                      Disease                                
Name
Tumor predisposition syndrome
Description
Tumor predisposition syndrome (TPDS) is conferring an increased risk of hereditary, early-onset cancers; predominantly uveal melanoma, malignant mesothelioma, renal cell carcinoma, and BAP1-inactivated melanocytic tumor (BIMT). Germline mutations in the BAP1 gene cause this syndrome. BAP1 is a ubiquitin carboxy-terminal hydrolase that regulates a number of processes including DNA damage repair, cell cycle control, chromatin modification, and the immune response. Recently, it has been reported that germline MBD4 deficiency also causes TPDS. MBD4 encodes a glycosylase involved in base-excision repair.
Category
Cancer
Brite
Human diseases in ICD-11 classification [BR:br08403]
 02 Neoplasms
  Neoplasms of uncertain behaviour, except of lymphoid, haematopoietic, central nervous system or related tissues
   2F7Y  Neoplasms of uncertain behaviour of other specified site
    H02624  Tumor predisposition syndrome
Pathway-based classification of diseases [BR:br08402]
 Replication and repair
  nt06510  Telomere length regulation
   H02624  Tumor predisposition syndrome
  nt06504  Base excision repair
   H02624  Tumor predisposition syndrome
 Cellular process
  nt06523  Epigenetic regulation by Polycomb complexes
   H02624  Tumor predisposition syndrome
Pathway
hsa03410 Base excision repair   
Network
nt06504 Base excision repair
nt06510 Telomere length regulation
nt06523 Epigenetic regulation by Polycomb complexes
Gene
(TPDS1) BAP1 [HSA:8314] [KO:K08588]
(TPDS2) MBD4 [HSA:8930] [KO:K10801]
(TPDS3) POT1 [HSA:25913] [KO:K11109]
(TPDS4) CHEK2 [HSA:11200] [KO:K06641]
Other DBs
ICD-11: 2F7Y
OMIM: 614327 619975 615848 609265
Reference
  Authors
Louie BH, Kurzrock R
  Title
BAP1: Not just a BRCA1-associated protein.
  Journal
Cancer Treat Rev 90:102091 (2020)
DOI:10.1016/j.ctrv.2020.102091
Reference
PMID:21941004 (TPDS1)
  Authors
Abdel-Rahman MH, Pilarski R, Cebulla CM, Massengill JB, Christopher BN, Boru G, Hovland P, Davidorf FH
  Title
Germline BAP1 mutation predisposes to uveal melanoma, lung adenocarcinoma, meningioma, and other cancers.
  Journal
J Med Genet 48:856-9 (2011)
DOI:10.1136/jmedgenet-2011-100156
Reference
PMID:35460607 (TPDS2)
  Authors
Palles C, West HD, Chew E, Galavotti S, Flensburg C, Grolleman JE, Jansen EAM, Curley H, Chegwidden L, Arbe-Barnes EH, Lander N, Truscott R, Pagan J, Bajel A, Sherwood K, Martin L, Thomas H, Georgiou D, Fostira F, Goldberg Y, Adams DJ, van der Biezen SAM, Christie M, Clendenning M, Thomas LE, Deltas C, Dimovski AJ, Dymerska D, Lubinski J, Mahmood K, van der Post RS, Sanders M, Weitz J, Taylor JC, Turnbull C, Vreede L, van Wezel T, Whalley C, Arnedo-Pac C, Caravagna G, Cross W, Chubb D, Frangou A, Gruber AJ, Kinnersley B, Noyvert B, Church D, Graham T, Houlston R, Lopez-Bigas N, Sottoriva A, Wedge D, Jenkins MA, Kuiper RP, Roberts AW, Cheadle JP, Ligtenberg MJL, Hoogerbrugge N, Koelzer VH, Rivas AD, Winship IM, Ponte CR, Buchanan DD, Power DG, Green A, Tomlinson IPM, Sampson JR, Majewski IJ, de Voer RM
  Title
Germline MBD4 deficiency causes a multi-tumor predisposition syndrome.
  Journal
Am J Hum Genet 109:953-960 (2022)
DOI:10.1016/j.ajhg.2022.03.018
Reference
PMID:24686849 (TPDS3)
  Authors
Robles-Espinoza CD, Harland M, Ramsay AJ, Aoude LG, Quesada V, Ding Z, Pooley KA, Pritchard AL, Tiffen JC, Petljak M, Palmer JM, Symmons J, Johansson P, Stark MS, Gartside MG, Snowden H, Montgomery GW, Martin NG, Liu JZ, Choi J, Makowski M, Brown KM, Dunning AM, Keane TM, Lopez-Otin C, Gruis NA, Hayward NK, Bishop DT, Newton-Bishop JA, Adams DJ
  Title
POT1 loss-of-function variants predispose to familial melanoma.
  Journal
Nat Genet 46:478-481 (2014)
DOI:10.1038/ng.2947
Reference
PMID:10617473 (TPDS4)
  Authors
Bell DW, Varley JM, Szydlo TE, Kang DH, Wahrer DC, Shannon KE, Lubratovich M, Verselis SJ, Isselbacher KJ, Fraumeni JF, Birch JM, Li FP, Garber JE, Haber DA
  Title
Heterozygous germ line hCHK2 mutations in Li-Fraumeni syndrome.
  Journal
Science 286:2528-31 (1999)
DOI:10.1126/science.286.5449.2528
LinkDB

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KEGG   DISEASE: Pulmonary fibrosis and/or bone marrow failure, telomere-related
Entry
H02569                      Disease                                
Name
Pulmonary fibrosis and/or bone marrow failure, telomere-related
  Supergrp
Idiopathic pulmonary fibrosis [DS:H01299]
Description
Pulmonary fibrosis and/or bone marrow failure, telomere-related (PFBMFT) is also known as human telomere biology disorders, or short telomere syndromes. PFBMFT is a group of hereditary disorders caused by inherited loss-of-function mutations in telomere associated genes. It has a wide phenotypic spectrum that include bone marrow failure, pulmonary and liver fibrosis, mucocutaneous fragility, and predisposition to myelodysplastic syndromes and cancer.
Category
Hematologic disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 03 Diseases of the blood or blood-forming organs
  Anaemias or other erythrocyte disorders
   3A70  Aplastic anaemia
    H02569  Pulmonary fibrosis and/or bone marrow failure, telomere-related
Pathway-based classification of diseases [BR:br08402]
 Replication and repair
  nt06509  DNA replication
   H02569  Pulmonary fibrosis and/or bone marrow failure, telomere-related
  nt06510  Telomere length regulation
   H02569  Pulmonary fibrosis and/or bone marrow failure, telomere-related
  nt06502  Nucleotide excision repair
   H02569  Pulmonary fibrosis and/or bone marrow failure, telomere-related
  nt06506  Double-strand break repair
   H02569  Pulmonary fibrosis and/or bone marrow failure, telomere-related
  nt06508  Interstrand crosslink repair
   H02569  Pulmonary fibrosis and/or bone marrow failure, telomere-related
Pathway
hsa03420 Nucleotide excision repair   
Network
nt06502 Nucleotide excision repair
nt06506 Double-strand break repair
nt06508 Interstrand crosslink repair
nt06509 DNA replication
nt06510 Telomere length regulation
Gene
(PFBMFT1) TERT [HSA:7015] [KO:K11126]
(PFBMFT2) TERC [HSA:7012] [KO:K22183]
(PFBMFT3) RTEL1 [HSA:51750] [KO:K11136]
(PFBMFT4) PARN [HSA:5073] [KO:K01148]
(PFBMFT5) ZCCHC8 [HSA:55596] [KO:K13128]
(PFBMFT6) RPA1 [HSA:6117] [KO:K07466]
(PFBMFT7) NAF1 [HSA:92345] [KO:K14763]
(PFBMFT8) POT1 [HSA:25913] [KO:K11109]
(PFBMFT9) NOP10 [HSA:55505] [KO:K11130]
Other DBs
ICD-11: 3A70.0
OMIM: 614742 614743 616373 616371 618674 619767 620365 620367 620400
Reference
  Authors
Gansner JM, Rosas IO, Ebert BL
  Title
Pulmonary fibrosis, bone marrow failure, and telomerase mutation.
  Journal
N Engl J Med 366:1551-3 (2012)
DOI:10.1056/NEJMc1200999
Reference
PMID:15814878 (PFBMFT1)
  Authors
Yamaguchi H, Calado RT, Ly H, Kajigaya S, Baerlocher GM, Chanock SJ, Lansdorp PM, Young NS
  Title
Mutations in TERT, the gene for telomerase reverse transcriptase, in aplastic anemia.
  Journal
N Engl J Med 352:1413-24 (2005)
DOI:10.1056/NEJMoa042980
Reference
PMID:12090986 (PFBMFT2)
  Authors
Vulliamy T, Marrone A, Dokal I, Mason PJ
  Title
Association between aplastic anaemia and mutations in telomerase RNA.
  Journal
Lancet 359:2168-70 (2002)
DOI:10.1016/S0140-6736(02)09087-6
Reference
PMID:25848748 (PFBMFT3 PFBMFT4)
  Authors
Stuart BD, Choi J, Zaidi S, Xing C, Holohan B, Chen R, Choi M, Dharwadkar P, Torres F, Girod CE, Weissler J, Fitzgerald J, Kershaw C, Klesney-Tait J, Mageto Y, Shay JW, Ji W, Bilguvar K, Mane S, Lifton RP, Garcia CK
  Title
Exome sequencing links mutations in PARN and RTEL1 with familial pulmonary fibrosis and telomere shortening.
  Journal
Nat Genet 47:512-7 (2015)
DOI:10.1038/ng.3278
Reference
PMID:31488579 (PFBMFT5)
  Authors
Gable DL, Gaysinskaya V, Atik CC, Talbot CC Jr, Kang B, Stanley SE, Pugh EW, Amat-Codina N, Schenk KM, Arcasoy MO, Brayton C, Florea L, Armanios M
  Title
ZCCHC8, the nuclear exosome targeting component, is mutated in familial pulmonary fibrosis and is required for telomerase RNA maturation.
  Journal
Genes Dev 33:1381-1396 (2019)
DOI:10.1101/gad.326785.119
Reference
PMID:34767620 (PFBMFT6)
  Authors
Sharma R, Sahoo SS, Honda M, Granger SL, Goodings C, Sanchez L, Kunstner A, Busch H, Beier F, Pruett-Miller SM, Valentine MB, Fernandez AG, Chang TC, Geli V, Churikov D, Hirschi S, Pastor VB, Boerries M, Lauten M, Kelaidi C, Cooper MA, Nicholas S, Rosenfeld JA, Polychronopoulou S, Kannengiesser C, Saintome C, Niemeyer CM, Revy P, Wold MS, Spies M, Erlacher M, Coulon S, Wlodarski MW
  Title
Gain-of-function mutations in RPA1 cause a syndrome with short telomeres and somatic genetic rescue.
  Journal
Blood 139:1039-1051 (2022)
DOI:10.1182/blood.2021011980
Reference
PMID:27510903 (PFBMFT7)
  Authors
Stanley SE, Gable DL, Wagner CL, Carlile TM, Hanumanthu VS, Podlevsky JD, Khalil SE, DeZern AE, Rojas-Duran MF, Applegate CD, Alder JK, Parry EM, Gilbert WV, Armanios M
  Title
Loss-of-function mutations in the RNA biogenesis factor NAF1 predispose to pulmonary fibrosis-emphysema.
  Journal
Sci Transl Med 8:351ra107 (2016)
DOI:10.1126/scitranslmed.aaf7837
Reference
PMID:35420632 (PFBMFT8)
  Authors
Kelich J, Aramburu T, van der Vis JJ, Showe L, Kossenkov A, van der Smagt J, Massink M, Schoemaker A, Hennekam E, Veltkamp M, van Moorsel CHM, Skordalakes E
  Title
Telomere dysfunction implicates POT1 in patients with idiopathic pulmonary fibrosis.
  Journal
J Exp Med 219:213140 (2022)
DOI:10.1084/jem.20211681
Reference
PMID:32139460 (PFBMFT9)
  Authors
Kannengiesser C, Manali ED, Revy P, Callebaut I, Ba I, Borgel A, Oudin C, Haritou A, Kolilekas L, Malagari K, Borie R, Lainey E, Boileau C, Crestani B, Papiris SA
  Title
First heterozygous NOP10 mutation in familial pulmonary fibrosis.
  Journal
Eur Respir J 55:1902465 (2020)
DOI:10.1183/13993003.02465-2019
LinkDB

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KEGG   DISEASE: Cerebroretinal microangiopathy with calcifications and cysts
Entry
H02251                      Disease                                
Name
Cerebroretinal microangiopathy with calcifications and cysts;
Coats plus syndrome
Description
Cerebroretinal microangiopathy with calcifications and cysts (CRMCC), also known as Coats plus syndrome, is a rare and highly pleiotropic disorder particularly affecting the eye, brain, bone and gastrointestinal tract. The most characteristic features are retinal telangiectasia and exudates, and a distinctive pattern of intracranial calcification with an associated leukodystrophy and brain cysts. It has been reported that mutations CTC1 and STN1 cause CRMCC. Both of them are members of CST complex, that plays multiple roles in telomere C-strand synthesis.
Category
Nervous system disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 09 Diseases of the visual system
  Disorders of the eyeball posterior segment
   Disorders of the retina
    9B78  Certain specified retinal disorders
     H02251  Cerebroretinal microangiopathy with calcifications and cysts
Pathway-based classification of diseases [BR:br08402]
 Replication and repair
  nt06510  Telomere length regulation
   H02251  Cerebroretinal microangiopathy with calcifications and cysts
Network
nt06510 Telomere length regulation
Gene
(CRMCC1) CTC1 [HSA:80169] [KO:K23311]
(CRMCC2) STN1 [HSA:79991] [KO:K23312]
(CRMCC3) POT1 [HSA:25913] [KO:K11109]
Other DBs
ICD-11: 9B78.1
MeSH: C567401
OMIM: 612199 617341 620368
Reference
  Authors
Briggs TA, Abdel-Salam GM, Balicki M, Baxter P, Bertini E, Bishop N, Browne BH, Chitayat D, Chong WK, Eid MM, Halliday W, Hughes I, Klusmann-Koy A, Kurian M, Nischal KK, Rice GI, Stephenson JB, Surtees R, Talbot JF, Tehrani NN, Tolmie JL, Toomes C, van der Knaap MS, Crow YJ
  Title
Cerebroretinal microangiopathy with calcifications and cysts (CRMCC).
  Journal
Am J Med Genet A 146A:182-90 (2008)
DOI:10.1002/ajmg.a.32080
Reference
PMID:22267198 (CRMCC1)
  Authors
Anderson BH, Kasher PR, Mayer J, Szynkiewicz M, Jenkinson EM, Bhaskar SS, Urquhart JE, Daly SB, Dickerson JE, O'Sullivan J, Leibundgut EO, Muter J, Abdel-Salem GM, Babul-Hirji R, Baxter P, Berger A, Bonafe L, Brunstom-Hernandez JE, Buckard JA, Chitayat D, Chong WK, Cordelli DM, Ferreira P, Fluss J, Forrest EH, Franzoni E, Garone C, Hammans SR, Houge G, Hughes I, Jacquemont S, Jeannet PY, Jefferson RJ, Kumar R, Kutschke G, Lundberg S, Lourenco CM, Mehta R, Naidu S, Nischal KK, Nunes L, Ounap K, Philippart M, Prabhakar P, Risen SR, Schiffmann R, Soh C, Stephenson JB, Stewart H, Stone J, Tolmie JL, van der Knaap MS, Vieira JP, Vilain CN, Wakeling EL, Wermenbol V, Whitney A, Lovell SC, Meyer S, Livingston JH, Baerlocher GM, Black GC, Rice GI, Crow YJ
  Title
Mutations in CTC1, encoding conserved telomere maintenance component 1, cause Coats plus.
  Journal
Nat Genet 44:338-42 (2012)
DOI:10.1038/ng.1084
Reference
PMID:27432940 (CRMCC2)
  Authors
Simon AJ, Lev A, Zhang Y, Weiss B, Rylova A, Eyal E, Kol N, Barel O, Cesarkas K, Soudack M, Greenberg-Kushnir N, Rhodes M, Wiest DL, Schiby G, Barshack I, Katz S, Pras E, Poran H, Reznik-Wolf H, Ribakovsky E, Simon C, Hazou W, Sidi Y, Lahad A, Katzir H, Sagie S, Aqeilan HA, Glousker G, Amariglio N, Tzfati Y, Selig S, Rechavi G, Somech R
  Title
Mutations in STN1 cause Coats plus syndrome and are associated with genomic and telomere defects.
  Journal
J Exp Med 213:1429-40 (2016)
DOI:10.1084/jem.20151618
Reference
PMID:27013236 (CRMCC3)
  Authors
Takai H, Jenkinson E, Kabir S, Babul-Hirji R, Najm-Tehrani N, Chitayat DA, Crow YJ, de Lange T
  Title
A POT1 mutation implicates defective telomere end fill-in and telomere truncations in Coats plus.
  Journal
Genes Dev 30:812-26 (2016)
DOI:10.1101/gad.276873.115
LinkDB

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