Amycolatopsis albispora: A4R43_20070
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Entry
A4R43_20070 CDS
T05547
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aab
Amycolatopsis albispora
Pathway
aab03030
DNA replication
aab03410
Base excision repair
aab03420
Nucleotide excision repair
aab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4R43_20070
03410 Base excision repair
A4R43_20070
03420 Nucleotide excision repair
A4R43_20070
03430 Mismatch repair
A4R43_20070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aab03032
]
A4R43_20070
03400 DNA repair and recombination proteins [BR:
aab03400
]
A4R43_20070
Enzymes [BR:
aab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A4R43_20070
DNA replication proteins [BR:
aab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A4R43_20070
DNA repair and recombination proteins [BR:
aab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A4R43_20070
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4R43_20070
MMR (mismatch excision repair)
DNA ligase
A4R43_20070
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A4R43_20070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
AXB44517
UniProt:
A0A344L8Z3
LinkDB
All DBs
Position
complement(4342348..4344498)
Genome browser
AA seq
716 aa
AA seq
DB search
MSSEELPSDQVAPEAAQDLADVPADVRERHGALAEEIRGHQFRYYVLDSPTISDGQFDAL
LRELEELEQAHPGLATPDSPTQQVGGTFSTEFTAHDHLERMYSLDNAFDAEELAAWVERT
EKEIGSTRYLCELKIDGLAINLLYEKGKLTRALTRGDGRTGEDVTLNVRTLDQVPDRLTA
TDRFPVPDLVEVRGEVFFRVEDFAELNARLVEAGKPPFANPRNTAAGSLRQKDPKVTKSR
KLRLICHGLGKREGFEPTRQSEAYEALAAWGLPVSEHTKVLSSAAELTEHIEYWGEHRHD
AEHEIDGVVIKVDQVSLQRRLGTTSRAPRWAIAYKYPPEEATTKLLDIQVNVGRTGRVTP
FAVMEPVKVAGSTVAMATLHNAEEVKRKGVLIGDRVVIRKAGDVIPEVLGPVVDARTGEE
REFLMPTRCPECDTKLAYQKEGDVDIRCPNARTCPAQLRERLFHLAGRGAFDIEVLGYEA
ASALLESGAVADEGDVFDLDEERLAGVELFRTKAGELSANARRLLANLDSAKDRPLWKVI
VGLSIRHVGPTAAQALAREFGSLELIEQATEEQLADVDGVGPTIAHAVREWFEVDWHREV
VEKWRRAGVRMEEERDSSIPRNLEGLSIVVTGSLETFSRDEAKEVIMARGGKAAGSVSKK
TAFVVVGDSPGSKYDKAVQLKVPVLDENGFRVLLERGPEAAAEVALVTEEPAAAEE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcgaagaactcccgtcagaccaggtcgcgcccgaagccgcgcaggacctcgcg
gacgtccccgccgacgtccgcgagcgccacggcgcgctcgccgaggagatccgcgggcac
cagttccggtactacgtgctggactcaccgaccatttcggacggacagttcgacgccctg
ctgcgtgaactcgaagaactggagcaggcgcaccccggactggccactccggactcgccg
acgcagcaggtcggcggcaccttctccaccgagttcaccgcgcacgaccacctcgagcgc
atgtacagcctggacaacgcgttcgacgccgaggaactcgccgcctgggtggagcgcacg
gagaaggagatcggctccacgcggtacctgtgcgagctgaagatcgacggcctggccatc
aacctgctgtacgagaagggcaagctgaccagggcgctgacccgcggtgacggccgcacc
ggcgaggacgtcacgctcaacgtccgcacgctggaccaggtgcccgacaggctgaccgcc
accgaccggttcccggtaccggacctggtcgaggtgcgcggtgaggtgttcttccgggtg
gaggacttcgctgagctgaacgcgcggctggtcgaggcgggcaaaccgccgttcgcgaac
ccgcgcaacaccgcggccggttcgctgcggcagaaggatccgaaggtgaccaagagccgc
aagctgcggctgatctgccacggcctcggcaagcgcgaaggcttcgagccgacgcgccag
tccgaggcgtacgaggcgctcgcggcgtggggactgcccgtttccgagcacaccaaggtg
ctttcctccgccgccgagctgaccgagcacatcgagtactggggcgagcaccggcacgac
gccgagcacgagatcgacggtgtggtgatcaaggtcgaccaggtgtcgctgcaacgtcgc
ctcggcacgacttcacgcgcgccgcgctgggcgatcgcctacaagtacccgccggaggag
gccaccaccaagctgctcgacatccaggtcaacgtcgggcgcaccgggcgggtcaccccg
ttcgcggtgatggagccggtgaaggtggccgggtccaccgtggcgatggccaccctgcac
aacgccgaggaggtcaagcgcaagggcgtgctgatcggcgaccgcgtggtgatccgcaag
gccggtgacgtgatccccgaggtgctcgggccggtggtggacgcgcgcaccggcgaggaa
cgcgagttcctgatgcccacgcgctgccccgaatgcgacacgaagctcgcctaccagaag
gaaggcgacgtcgacatccgctgcccgaacgcccggacctgcccggcgcaactgcgggag
cggttgttccacctggccgggcgcggggcgttcgacatcgaggtgctcggttacgaggcc
gcgtcggcgctgctggagtctggcgcggtggccgacgagggcgacgtgttcgacctcgac
gaagagcggctggccggggtggagttgttccgcaccaaggcgggcgagctgtcggcgaac
gcgcggcggctgctggcgaacctggactcggccaaggaccgtccactgtggaaggtgatc
gtcggcctgtcgatccggcacgtcgggccgaccgcggcgcaggcgctggcgcgggagttc
ggttcgctggagctgatcgagcaggccaccgaggagcaactcgccgacgtcgacggggtg
gggccgacgatcgcgcacgcggtgcgggaatggttcgaggttgactggcaccgcgaggtg
gtcgagaagtggcggcgggccggggtgcggatggaggaggagcgcgacagctccatcccg
cgcaacctggaaggactgtccattgtggtcaccggctcgctggagaccttctcgcgtgac
gaggccaaggaagtcatcatggcgcggggcggcaaggcggccgggtcggtgtcgaagaag
acggcttttgtggtggtcggggattcgccggggtcgaagtacgacaaggcggtgcagctg
aaggtgccggtgctcgacgagaacggtttccgggtactgctggagcgcggtccggaggcg
gccgcggaggtcgcgttggtcaccgaggagcccgccgcggccgaagagtga
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